Non-Coding RNA Search

Ss1.1-Pig1-131I24.5

Sequence:


               
               GGCTGTTTGTCCCCTGGGGAATGGAGGGGTGGGGAGCAGGGGGAGCAAAGTGATGATTTC
TGGGATCTGTACAAATCGTATTGTTGCCTTTTTACAAAACCTTGCTGTACTGTGTGTTCT
CTTTGAGGGCTTTTATATGCACCTGAATGAGGGCTGAAGTTTGCATTAGAATGCACTCAC
ACTCCAATTGTACTGCTTGACAAAGAAGACCCACTTTGGGATCTTCAGACCCATCAAGGC
TTCCTTTTCTGTTCCCAGAACTACACTGACTTTGTCAAGTTACCTTGGCAGGGAGAGAGT
CCCTGCAAGTCAAAAAGACTGGTAGGAATTTTCAGTTTGAAATTTTTCGAGATTACATAA
CCTGTTAATTTTTTTTGTTGTTGTTGTAAATAACACTTTGTTACGAAGACCTTACAAACC
TCTTCTTAAGACATTCTTACTCCAGATCCAGGCAAAAACACTTCCAGGTTTGTAAATGAC
TATTTCCTGACGTACATTCTTTTCTATTAAAATGCAAAATGATCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGTTTGTCCCCTGGGGAATGGAGGGGTGGGGAGCAGGGGGAGCAAAGTGATGATTTC
TGGGATCTGTACAAATCGTATTGTTGCCTTTTTACAAAACCTTGCTGTACTGTGTGTTCT
CTTTGAGGGCTTTTATATGCACCTGAATGAGGGCTGAAGTTTGCATTAGAATGCACTCAC
ACTCCAATTGTACTGCTTGACAAAGAAGACCCACTTTGGGATCTTCAGACCCATCAAGGC
TTCCTTTTCTGTTCCCAGAACTACACTGACTTTGTCAAGTTACCTTGGCAGGGAGAGAGT
CCCTGCAAGTCAAAAAGACTGGTAGGAATTTTCAGTTTGAAATTTTTCGAGATTACATAA
CCTGTTAATTTTTTTTGTTGTTGTTGTAAATAACACTTTGTTACGAAGACCTTACAAACC
TCTTCTTAAGACATTCTTACTCCAGATCCAGGCAAAAACACTTCCAGGTTTGTAAATGAC
TATTTCCTGACGTACATTCTTTTCTATTAAAATGCAAAATGATCTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               141-476, - strand, RNAz p=0.979097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-476, - strand, RNAz p=0.979097

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               62-528, gnl|bosTau2|chr22 (35975993-35975533)
               

               
               62-528, gnl|Hg17|chr3 (53821894-53822368)
               

               
               62-528, gnl|Mm7|chr14 (27470471-27470034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-528, gnl|bosTau2|chr22 (35975993-35975533)
               

               
               62-528, gnl|Hg17|chr3 (53821894-53822368)
               

               
               62-528, gnl|Mm7|chr14 (27470471-27470034)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.415628)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               csk (0.140746)

	62-528, gnl\|bosTau2\|chr22 (35975993-35975533)
	62-528, gnl\|Hg17\|chr3 (53821894-53822368)
	62-528, gnl\|Mm7\|chr14 (27470471-27470034)