Ss1.1-Pig1-131J03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGGGCTCAACGTGAAAAGCGGGGCCATCATGTCCGCGCTGTCGGACACCGAGATCCAG CGGGAGATCGGCATCAGCAACCCCCTGCACAGGCTCAAGCTGCGGCTGGCCATTCAGGAG ATCATGTCCCTGACCAGCCCCTCGGCGCCCCCGACCTCGAGGACGACCCTGGCCTACGGG GACATGAACCACGAGTGGATCGGCAACGAGTGGCTGCCCAGCCTGGGCCTCCCGCAGTAC CGCAGCTACTTCATGGAGTGCCTGGTGGACGCGCGGATGCTGGACCACCTGACCAAGAAG GACCTCCGCGGGCAGCTGAAGATGGTCGACAGTTTCCACAGAAACAGTTTCCAGTGTGGA ATTATGTGCCTGCGAAGGTTAAATTATGACCGAAAAGAACTGGAGAGAAGAAGAGAAGAA AGCCAGAATGAACTAAAAGACGTGCTCGTCTGGAGCAACGACCGCGTCATCCGCTGGATC CTCTCCGTGGGCCTCAAGGAGTACGCCAACAACCTGCTCGAGAGCGGCGTGCACGGCGCG CTCATGGCCTTGGACGAGACCTTCGACTTCAGCGCCCTGGCGCTCTTGTTACAGATCCCC ACGCAGAACACCCAGGCTCGTGCTGTCTTGGAAAGAGAGTTTAACAACCTTTTGGTCATG GGGACTGACAGACGGTTTGATGAGGACGACGACAAAAGCTTTAGGAGAGCACCCTCCTGG AGAAGGAAGTTCAGACCGAAGGACGTGCGTGGTGTGGCCGCCGGCTCCGCAGAGATCCTC CCCGCGGACTTCCGGGCCACCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGGGCTCAACGTGAAAAGCGGGGCCATCATGTCCGCGCTGTCGGACACCGAGATCCAG CGGGAGATCGGCATCAGCAACCCCCTGCACAGGCTCAAGCTGCGGCTGGCCATTCAGGAG ATCATGTCCCTGACCAGCCCCTCGGCGCCCCCGACCTCGAGGACGACCCTGGCCTACGGG GACATGAACCACGAGTGGATCGGCAACGAGTGGCTGCCCAGCCTGGGCCTCCCGCAGTAC CGCAGCTACTTCATGGAGTGCCTGGTGGACGCGCGGATGCTGGACCACCTGACCAAGAAG GACCTCCGCGGGCAGCTGAAGATGGTCGACAGTTTCCACAGAAACAGTTTCCAGTGTGGA ATTATGTGCCTGCGAAGGTTAAATTATGACCGAAAAGAACTGGAGAGAAGAAGAGAAGAA AGCCAGAATGAACTAAAAGACGTGCTCGTCTGGAGCAACGACCGCGTCATCCGCTGGATC CTCTCCGTGGGCCTCAAGGAGTACGCCAACAACCTGCTCGAGAGCGGCGTGCACGGCGCG CTCATGGCCTTGGACGAGACCTTCGACTTCAGCGCCCTGGCGCTCTTGTTACAGATCCCC ACGCAGAACACCCAGGCTCGTGCTGTCTTGGAAAGAGAGTTTAACAACCTTTTGGTCATG GGGACTGACAGACGGTTTGATGAGGACGACGACAAAAGCTTTAGGAGAGCACCCTCCTGG AGAAGGAAGTTCAGACCGAAGGACGTGCGTGGTGTGGCCGCCGGCTCCGCAGAGATCCTC CCCGCGGACTTCCGGGCCACCTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 1-164, gnl|bosTau2|chr16 (100403-100565) | |
| 1-164, gnl|canFam2|chr7 (3133861-3133643) | |
| 1-164, gnl|danRer3|chr11 (21714017-21713809) | |
| 1-164, gnl|dasNov1|scaffold_30534 (13940-14158) | |
| 1-164, gnl|echTel1|scaffold_233744 (8190-7973) | |
| 1-164, gnl|fr1|chrUn (75260086-75259879) | |
| 1-164, gnl|galGal2|chr32 (157376-157158) | |
| 1-164, gnl|hg17|chr1 (199761000-199761218) | |
| 1-164, gnl|Hg17|chr1 (199761039-199761201) | |
| 1-164, gnl|loxAfr1|scaffold_40785 (8708-8926) | |
| 1-164, gnl|mm7|chr1 (134202525-134202307) | |
| 1-164, gnl|Mm7|chr1 (134202484-134202322) | |
| 1-164, gnl|monDom2|scaffold_13 (3045075-3045296) | |
| 1-164, gnl|oryCun1|scaffold_190334 (6730-6507) | |
| 1-164, gnl|panTro1|chr1 (182614883-182615101) | |
| 1-164, gnl|rheMac2|chr1 (167379238-167379020) | |
| 1-164, gnl|rn3|chr13 (47283420-47283202) | |
| 1-164, gnl|tetNig1|chr19 (1474569-1474778) | |
| 1-164, gnl|xenTro1|scaffold_76 (671365-671157) | |
| 165-339, gnl|bosTau2|chr16 (103671-103845) | |
| 165-339, gnl|canFam2|chr1 (110199476-110199294) | |
| 165-339, gnl|danRer3|chr11 (21702627-21702442) | |
| 165-339, gnl|dasNov1|scaffold_30534 (17634-17797) | |
| 165-339, gnl|echTel1|scaffold_233744 (4229-4044) | |
| 165-339, gnl|fr1|chrUn (75258758-75258575) | |
| 165-339, gnl|galGal2|chr32 (154898-154716) | |
| 165-339, gnl|hg17|chr1 (199764612-199764797) | |
| 165-339, gnl|Hg17|chr1 (199764612-199764786) | |
| 165-339, gnl|loxAfr1|scaffold_8721 (30927-31110) | |
| 165-339, gnl|mm7|chr1 (134199539-134199354) | |
| 165-339, gnl|Mm7|chr1 (134199537-134199363) | |
| 165-339, gnl|monDom2|scaffold_13 (3048676-3048857) | |
| 165-339, gnl|oryCun1|scaffold_190334 (2966-2781) | |
| 165-339, gnl|panTro1|chr1 (182618743-182618928) | |
| 165-339, gnl|rheMac2|chr1 (167375774-167375589) | |
| 165-339, gnl|rn3|chr13 (47280427-47280242) | |
| 165-339, gnl|tetNig1|chr19 (1475452-1475626) | |
| 165-339, gnl|xenTro1|scaffold_76 (666216-666033) | |
| 438-616, gnl|bosTau2|chr18 (48272263-48272441) | |
| 438-616, gnl|canFam2|chr1 (110198573-110198422) | |
| 438-616, gnl|danRer3|chr3 (24235009-24234856) | |
| 438-616, gnl|dasNov1|scaffold_7667 (1012-860) | |
| 438-616, gnl|echTel1|scaffold_294724 (8759-8911) | |
| 438-616, gnl|fr1|chrUn (178040805-178040958) | |
| 438-616, gnl|galGal2|chr32 (153623-153471) | |
| 438-616, gnl|hg17|chr19 (54344051-54344204) | |
| 438-616, gnl|Hg17|chr19 (54344060-54344238) | |
| 438-616, gnl|loxAfr1|scaffold_223548 (936-1088) | |
| 438-616, gnl|mm7|chr7 (41516984-41516832) | |
| 438-616, gnl|Mm7|chr7 (41516974-41516796) | |
| 438-616, gnl|monDom2|scaffold_105 (4276627-4276773) | |
| 438-616, gnl|oryCun1|scaffold_121629 (317-162) | |
| 438-616, gnl|panTro1|chr20_random (24871091-24870939) | |
| 438-616, gnl|rheMac2|chr19 (55425312-55425464) | |
| 438-616, gnl|rn3|chr1 (95889177-95889025) | |
| 438-616, gnl|tetNig1|chr3 (14645720-14645567) | |
| 438-616, gnl|xenTro1|scaffold_98 (1805955-1806107) | |
| 683-804, gnl|bosTau2|chr29 (41480720-41480841) | |
| 683-804, gnl|canFam2|chr18 (51005044-51004916) | |
| 683-804, gnl|danRer3|chr4 (28974953-28975072) | |
| 683-804, gnl|dasNov1|scaffold_166687 (1255-1132) | |
| 683-804, gnl|echTel1|scaffold_294724 (9310-9421) | |
| 683-804, gnl|fr1|chrUn (181223437-181223320) | |
| 683-804, gnl|galGal2|chr5 (15152643-15152771) | |
| 683-804, gnl|hg17|chr11 (69901783-69901911) | |
| 683-804, gnl|Hg17|chr11 (69901782-69901903) | |
| 683-804, gnl|loxAfr1|scaffold_8721 (35601-35729) | |
| 683-804, gnl|mm7|chr7 (140906497-140906369) | |
| 683-804, gnl|Mm7|chr7 (140906496-140906375) | |
| 683-804, gnl|monDom2|scaffold_247 (79734-79606) | |
| 683-804, gnl|oryCun1|scaffold_214242 (29941-29813) | |
| 683-804, gnl|panTro1|chr9 (71028798-71028926) | |
| 683-804, gnl|rheMac2|chr14 (4392110-4391982) | |
| 683-804, gnl|rn3|chr1 (205065224-205065096) | |
| 683-804, gnl|tetNig1|chrUn_random (6533320-6533201) | |
| 683-804, gnl|xenTro1|scaffold_76 (663604-663467) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-164, gnl|bosTau2|chr16 (100403-100565) | |
| 1-164, gnl|canFam2|chr7 (3133861-3133643) | |
| 1-164, gnl|danRer3|chr11 (21714017-21713809) | |
| 1-164, gnl|dasNov1|scaffold_30534 (13940-14158) | |
| 1-164, gnl|echTel1|scaffold_233744 (8190-7973) | |
| 1-164, gnl|fr1|chrUn (75260086-75259879) | |
| 1-164, gnl|galGal2|chr32 (157376-157158) | |
| 1-164, gnl|hg17|chr1 (199761000-199761218) | |
| 1-164, gnl|Hg17|chr1 (199761039-199761201) | |
| 1-164, gnl|loxAfr1|scaffold_40785 (8708-8926) | |
| 1-164, gnl|mm7|chr1 (134202525-134202307) | |
| 1-164, gnl|Mm7|chr1 (134202484-134202322) | |
| 1-164, gnl|monDom2|scaffold_13 (3045075-3045296) | |
| 1-164, gnl|oryCun1|scaffold_190334 (6730-6507) | |
| 1-164, gnl|panTro1|chr1 (182614883-182615101) | |
| 1-164, gnl|rheMac2|chr1 (167379238-167379020) | |
| 1-164, gnl|rn3|chr13 (47283420-47283202) | |
| 1-164, gnl|tetNig1|chr19 (1474569-1474778) | |
| 1-164, gnl|xenTro1|scaffold_76 (671365-671157) | |
| 165-339, gnl|bosTau2|chr16 (103671-103845) | |
| 165-339, gnl|canFam2|chr1 (110199476-110199294) | |
| 165-339, gnl|danRer3|chr11 (21702627-21702442) | |
| 165-339, gnl|dasNov1|scaffold_30534 (17634-17797) | |
| 165-339, gnl|echTel1|scaffold_233744 (4229-4044) | |
| 165-339, gnl|fr1|chrUn (75258758-75258575) | |
| 165-339, gnl|galGal2|chr32 (154898-154716) | |
| 165-339, gnl|hg17|chr1 (199764612-199764797) | |
| 165-339, gnl|Hg17|chr1 (199764612-199764786) | |
| 165-339, gnl|loxAfr1|scaffold_8721 (30927-31110) | |
| 165-339, gnl|mm7|chr1 (134199539-134199354) | |
| 165-339, gnl|Mm7|chr1 (134199537-134199363) | |
| 165-339, gnl|monDom2|scaffold_13 (3048676-3048857) | |
| 165-339, gnl|oryCun1|scaffold_190334 (2966-2781) | |
| 165-339, gnl|panTro1|chr1 (182618743-182618928) | |
| 165-339, gnl|rheMac2|chr1 (167375774-167375589) | |
| 165-339, gnl|rn3|chr13 (47280427-47280242) | |
| 165-339, gnl|tetNig1|chr19 (1475452-1475626) | |
| 165-339, gnl|xenTro1|scaffold_76 (666216-666033) | |
| 438-616, gnl|bosTau2|chr18 (48272263-48272441) | |
| 438-616, gnl|canFam2|chr1 (110198573-110198422) | |
| 438-616, gnl|danRer3|chr3 (24235009-24234856) | |
| 438-616, gnl|dasNov1|scaffold_7667 (1012-860) | |
| 438-616, gnl|echTel1|scaffold_294724 (8759-8911) | |
| 438-616, gnl|fr1|chrUn (178040805-178040958) | |
| 438-616, gnl|galGal2|chr32 (153623-153471) | |
| 438-616, gnl|hg17|chr19 (54344051-54344204) | |
| 438-616, gnl|Hg17|chr19 (54344060-54344238) | |
| 438-616, gnl|loxAfr1|scaffold_223548 (936-1088) | |
| 438-616, gnl|mm7|chr7 (41516984-41516832) | |
| 438-616, gnl|Mm7|chr7 (41516974-41516796) | |
| 438-616, gnl|monDom2|scaffold_105 (4276627-4276773) | |
| 438-616, gnl|oryCun1|scaffold_121629 (317-162) | |
| 438-616, gnl|panTro1|chr20_random (24871091-24870939) | |
| 438-616, gnl|rheMac2|chr19 (55425312-55425464) | |
| 438-616, gnl|rn3|chr1 (95889177-95889025) | |
| 438-616, gnl|tetNig1|chr3 (14645720-14645567) | |
| 438-616, gnl|xenTro1|scaffold_98 (1805955-1806107) | |
| 683-804, gnl|bosTau2|chr29 (41480720-41480841) | |
| 683-804, gnl|canFam2|chr18 (51005044-51004916) | |
| 683-804, gnl|danRer3|chr4 (28974953-28975072) | |
| 683-804, gnl|dasNov1|scaffold_166687 (1255-1132) | |
| 683-804, gnl|echTel1|scaffold_294724 (9310-9421) | |
| 683-804, gnl|fr1|chrUn (181223437-181223320) | |
| 683-804, gnl|galGal2|chr5 (15152643-15152771) | |
| 683-804, gnl|hg17|chr11 (69901783-69901911) | |
| 683-804, gnl|Hg17|chr11 (69901782-69901903) | |
| 683-804, gnl|loxAfr1|scaffold_8721 (35601-35729) | |
| 683-804, gnl|mm7|chr7 (140906497-140906369) | |
| 683-804, gnl|Mm7|chr7 (140906496-140906375) | |
| 683-804, gnl|monDom2|scaffold_247 (79734-79606) | |
| 683-804, gnl|oryCun1|scaffold_214242 (29941-29813) | |
| 683-804, gnl|panTro1|chr9 (71028798-71028926) | |
| 683-804, gnl|rheMac2|chr14 (4392110-4391982) | |
| 683-804, gnl|rn3|chr1 (205065224-205065096) | |
| 683-804, gnl|tetNig1|chrUn_random (6533320-6533201) | |
| 683-804, gnl|xenTro1|scaffold_76 (663604-663467) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) | |
| jca (0.11396) |