Non-Coding RNA Search

Ss1.1-Pig1-131L10.5

Sequence:


               
               AGCTTTTAAGGCCCTTTCTTTAACAGCTTTTATGAGTTAGCAGCCATCCTATGTTTCGTA
GACTTCTGTGGGCAGTCAGGTTTACCAAGCACCTAGCAGAATGCTCCTCTTTTTTCTAAA
ACTTAAGGTCTGACTGGTGAGTAAGTTTTGAACTTATACTAAAAATTATACTAAATATCT
TTTCTGGTGAAGACTCTTGGATAGATGAGAGATAAGACAAGCACCTTGGGAAACTTCTTC
AAGAAAGGTAGCACAGAGGGTGGCAGAATGGTTCTTTCTTTTAGCGCCCTGTCAGGTGCT
GGGATACAGCTTTAACCATGACAGACGTGAGCTCTGCCATCTTGGACTCAGAGTTTTCCG
GAGGGTGAAGTGAGCTGACAGGTGATACAGTATGTTGTAATTAGTGCTGTGATTTAGGAA
TTGCAGAGAACTCCCAGGAGTGATGCTGGGTAGGGGCAGGAGTCATGGTAGGCTTCTTGG
AAAAAGTGCTGTCTAAGCCAAGAAGAGTTACAAGTTAGCTAGTAAGAGAGAAACGGGGGA
AGTGGAATGGCACTGCTGAGGGTAGACTAGACCGTGGTTAAGGGTTGGGAGATTTTTTTA
AAAAATAAGGTGTCCAGTAAAGCTGGCATGGGGAGCGGTTGGCAGGGACTAGGTCATTGG
AGGGCTTTGTAAACCACACTAAAGAGTTTGGACCTTAAGTGAGGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTTTAAGGCCCTTTCTTTAACAGCTTTTATGAGTTAGCAGCCATCCTATGTTTCGTA
GACTTCTGTGGGCAGTCAGGTTTACCAAGCACCTAGCAGAATGCTCCTCTTTTTTCTAAA
ACTTAAGGTCTGACTGGTGAGTAAGTTTTGAACTTATACTAAAAATTATACTAAATATCT
TTTCTGGTGAAGACTCTTGGATAGATGAGAGATAAGACAAGCACCTTGGGAAACTTCTTC
AAGAAAGGTAGCACAGAGGGTGGCAGAATGGTTCTTTCTTTTAGCGCCCTGTCAGGTGCT
GGGATACAGCTTTAACCATGACAGACGTGAGCTCTGCCATCTTGGACTCAGAGTTTTCCG
GAGGGTGAAGTGAGCTGACAGGTGATACAGTATGTTGTAATTAGTGCTGTGATTTAGGAA
TTGCAGAGAACTCCCAGGAGTGATGCTGGGTAGGGGCAGGAGTCATGGTAGGCTTCTTGG
AAAAAGTGCTGTCTAAGCCAAGAAGAGTTACAAGTTAGCTAGTAAGAGAGAAACGGGGGA
AGTGGAATGGCACTGCTGAGGGTAGACTAGACCGTGGTTAAGGGTTGGGAGATTTTTTTA
AAAAATAAGGTGTCCAGTAAAGCTGGCATGGGGAGCGGTTGGCAGGGACTAGGTCATTGG
AGGGCTTTGTAAACCACACTAAAGAGTTTGGACCTTAAGTGAGGGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-533, + strand, RNAz p=0.907803

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-533, + strand, RNAz p=0.907803

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               4-258, gnl|bosTau2|chr13 (56255311-56255575)
               

               
               4-258, gnl|Hg17|chr20 (42561532-42561291)
               

               
               4-258, gnl|Mm7|chr2 (163365544-163365178)
               


               
               299-708, gnl|bosTau2|chr13 (56255640-56256044)
               

               
               299-708, gnl|canFam2|chr24 (34934394-34934702)
               

               
               299-708, gnl|dasNov1|scaffold_209926 (62-374)
               

               
               299-708, gnl|hg17|chr20 (42560779-42561085)
               

               
               299-708, gnl|Hg17|chr20 (42561223-42560839)
               

               
               299-708, gnl|oryCun1|scaffold_176362 (57948-58194)
               

               
               299-708, gnl|panTro1|chr21 (45001567-45001873)
               

               
               299-708, gnl|rheMac2|chr10 (19950805-19950499)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-258, gnl|bosTau2|chr13 (56255311-56255575)
               

               
               4-258, gnl|Hg17|chr20 (42561532-42561291)
               

               
               4-258, gnl|Mm7|chr2 (163365544-163365178)
               


               
               299-708, gnl|bosTau2|chr13 (56255640-56256044)
               

               
               299-708, gnl|canFam2|chr24 (34934394-34934702)
               

               
               299-708, gnl|dasNov1|scaffold_209926 (62-374)
               

               
               299-708, gnl|hg17|chr20 (42560779-42561085)
               

               
               299-708, gnl|Hg17|chr20 (42561223-42560839)
               

               
               299-708, gnl|oryCun1|scaffold_176362 (57948-58194)
               

               
               299-708, gnl|panTro1|chr21 (45001567-45001873)
               

               
               299-708, gnl|rheMac2|chr10 (19950805-19950499)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	4-258, gnl\|bosTau2\|chr13 (56255311-56255575)
	4-258, gnl\|Hg17\|chr20 (42561532-42561291)
	4-258, gnl\|Mm7\|chr2 (163365544-163365178)

	299-708, gnl\|bosTau2\|chr13 (56255640-56256044)
	299-708, gnl\|canFam2\|chr24 (34934394-34934702)
	299-708, gnl\|dasNov1\|scaffold_209926 (62-374)
	299-708, gnl\|hg17\|chr20 (42560779-42561085)
	299-708, gnl\|Hg17\|chr20 (42561223-42560839)
	299-708, gnl\|oryCun1\|scaffold_176362 (57948-58194)
	299-708, gnl\|panTro1\|chr21 (45001567-45001873)
	299-708, gnl\|rheMac2\|chr10 (19950805-19950499)