Ss1.1-Pig1-131P05.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TCCGGGTGGAAGGGCGTGTCGGCTCTCTACCCTCTGGTCACGCGCAGCAGGAAGTGGCGC CCGAAGCGGATTATTCGAGATGGGGACCACTCTGGACATTAAGATTAAAAGAGCGAACAA GGTGTATCACGCCGGGGAGATGCTCTCCGGCGTGGTGGTCATATCCGGCAAGGACTCAGT CCAGCACCAGGGAGTCTCCTTGACAGTGGAAGGAACCGTGAACCTCCAGCTCAGTGCCAA GAGCGTGGGTGTGTTCGAAGCGTTCTATAATTCTGTTAAGCCTATCCAGATCATCAACAG CACCGTCGAAATGGCGAAGCCAGGAAAATTCCCCAGTGGCAAAACCGAGATTCCTTTTGA GTTTCCTCTCCACGTGAAGGGCACCAAAGTTCTGTATGAGACTTACCACGGCGTGTTTGT CAACATCCAGTACACTCTGCGCTGCGACATGAAGCGGTCCCTGCTGGCCAAGGACCTGAC AAAGACCTGTGAATTCATCGTTCACTCGGCTCCGCAGAAGGGAAAGCTGACCCCAAGTCC TGTGGACTTCACCATCACACCTGACACCTTGCAGAATGTCAAAGAGAGAGCCTTGCTCCC CAAATTTCTCATCAGAGGACACCTCAACTCAACCAACTGTGTCATCACCCAGCCTCTCAC AGGAGAGCTGGTGGTGGAGAGCTCGGAGGCCGCCATCAAGAGCATCGAGCTGCAGCTGGT CCGCGTGGAGACGTGCGGCTGTGCAGAAGGCTATGCCCGCGATGCCACTGAGATTCAGAA CATCCAGATCGCCGACGGGGACGTGTGTCGGAGCCTCTCTGTGCCCATATACATGGTCTT CCCCCGGCTGTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TCCGGGTGGAAGGGCGTGTCGGCTCTCTACCCTCTGGTCACGCGCAGCAGGAAGTGGCGC CCGAAGCGGATTATTCGAGATGGGGACCACTCTGGACATTAAGATTAAAAGAGCGAACAA GGTGTATCACGCCGGGGAGATGCTCTCCGGCGTGGTGGTCATATCCGGCAAGGACTCAGT CCAGCACCAGGGAGTCTCCTTGACAGTGGAAGGAACCGTGAACCTCCAGCTCAGTGCCAA GAGCGTGGGTGTGTTCGAAGCGTTCTATAATTCTGTTAAGCCTATCCAGATCATCAACAG CACCGTCGAAATGGCGAAGCCAGGAAAATTCCCCAGTGGCAAAACCGAGATTCCTTTTGA GTTTCCTCTCCACGTGAAGGGCACCAAAGTTCTGTATGAGACTTACCACGGCGTGTTTGT CAACATCCAGTACACTCTGCGCTGCGACATGAAGCGGTCCCTGCTGGCCAAGGACCTGAC AAAGACCTGTGAATTCATCGTTCACTCGGCTCCGCAGAAGGGAAAGCTGACCCCAAGTCC TGTGGACTTCACCATCACACCTGACACCTTGCAGAATGTCAAAGAGAGAGCCTTGCTCCC CAAATTTCTCATCAGAGGACACCTCAACTCAACCAACTGTGTCATCACCCAGCCTCTCAC AGGAGAGCTGGTGGTGGAGAGCTCGGAGGCCGCCATCAAGAGCATCGAGCTGCAGCTGGT CCGCGTGGAGACGTGCGGCTGTGCAGAAGGCTATGCCCGCGATGCCACTGAGATTCAGAA CATCCAGATCGCCGACGGGGACGTGTGTCGGAGCCTCTCTGTGCCCATATACATGGTCTT CCCCCGGCTGTT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 45 entry(ies) | More info |
Aligned organism(s): 45 entry(ies) | Help | Less info |
136-280, gnl|bosTau2|chr1 (99559143-99558999) | |
136-280, gnl|canFam2|chr31 (34520541-34520720) | |
136-280, gnl|canFam2|chr31 (34520551-34520677) | |
136-280, gnl|danRer3|chrNA (176066418-176066267) | |
136-280, gnl|danRer3|chrNA (176066413-176066292) | |
136-280, gnl|fr1|chrUn (196289116-196288956) | |
136-280, gnl|fr1|chrUn (196289109-196288989) | |
136-280, gnl|galGal2|chr1 (100794765-100794951) | |
136-280, gnl|hg17|chr2 (207377401-207377527) | |
136-280, gnl|hg17|chr21 (37534655-37534840) | |
136-280, gnl|Hg17|chr21 (37534811-37534667) | |
136-280, gnl|loxAfr1|scaffold_15458 (41305-41486) | |
136-280, gnl|loxAfr1|scaffold_15458 (41324-41441) | |
136-280, gnl|mm7|chr12 (91545682-91545812) | |
136-280, gnl|mm7|chr16 (94803918-94804095) | |
136-280, gnl|Mm7|chr16 (94804066-94803922) | |
136-280, gnl|monDom2|scaffold_16 (49736924-49737046) | |
136-280, gnl|monDom2|scaffold_29 (4844274-4844091) | |
136-280, gnl|oryCun1|scaffold_203484 (13203-13380) | |
136-280, gnl|oryCun1|scaffold_203484 (13209-13335) | |
136-280, gnl|panTro1|chr13 (97410253-97410379) | |
136-280, gnl|panTro1|chr22 (37567218-37567403) | |
136-280, gnl|rheMac2|chr12 (70579152-70579279) | |
136-280, gnl|rheMac2|chr3 (9376357-9376172) | |
136-280, gnl|rn3|chr11 (34844907-34845085) | |
136-280, gnl|rn3|chr3 (81709618-81709734) | |
136-280, gnl|tetNig1|chr7 (10223642-10223483) | |
136-280, gnl|tetNig1|chr7 (10223627-10223507) | |
136-280, gnl|xenTro1|scaffold_692 (600045-600211) | |
585-738, gnl|bosTau2|chr1 (99548811-99548658) | |
585-738, gnl|canFam2|chr31 (34503812-34503923) | |
585-738, gnl|danRer3|chrNA (176067229-176067120) | |
585-738, gnl|dasNov1|scaffold_13392 (6256-6367) | |
585-738, gnl|fr1|chrUn (196290000-196289891) | |
585-738, gnl|hg17|chr2 (207376973-207377064) | |
585-738, gnl|Hg17|chr21 (37522546-37522393) | |
585-738, gnl|loxAfr1|scaffold_36468 (9464-9575) | |
585-738, gnl|mm7|chr12 (91545424-91545536) | |
585-738, gnl|Mm7|chr16 (94794044-94793891) | |
585-738, gnl|monDom2|scaffold_16 (49736468-49736579) | |
585-738, gnl|oryCun1|scaffold_187110 (840-951) | |
585-738, gnl|panTro1|chr13 (97409825-97409916) | |
585-738, gnl|rheMac2|chr12 (70578716-70578807) | |
585-738, gnl|rn3|chr3 (81709153-81709262) | |
585-738, gnl|tetNig1|chr7 (10224501-10224392) |
Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
136-280, gnl|bosTau2|chr1 (99559143-99558999) | |
136-280, gnl|canFam2|chr31 (34520541-34520720) | |
136-280, gnl|canFam2|chr31 (34520551-34520677) | |
136-280, gnl|danRer3|chrNA (176066418-176066267) | |
136-280, gnl|danRer3|chrNA (176066413-176066292) | |
136-280, gnl|fr1|chrUn (196289116-196288956) | |
136-280, gnl|fr1|chrUn (196289109-196288989) | |
136-280, gnl|galGal2|chr1 (100794765-100794951) | |
136-280, gnl|hg17|chr2 (207377401-207377527) | |
136-280, gnl|hg17|chr21 (37534655-37534840) | |
136-280, gnl|Hg17|chr21 (37534811-37534667) | |
136-280, gnl|loxAfr1|scaffold_15458 (41305-41486) | |
136-280, gnl|loxAfr1|scaffold_15458 (41324-41441) | |
136-280, gnl|mm7|chr12 (91545682-91545812) | |
136-280, gnl|mm7|chr16 (94803918-94804095) | |
136-280, gnl|Mm7|chr16 (94804066-94803922) | |
136-280, gnl|monDom2|scaffold_16 (49736924-49737046) | |
136-280, gnl|monDom2|scaffold_29 (4844274-4844091) | |
136-280, gnl|oryCun1|scaffold_203484 (13203-13380) | |
136-280, gnl|oryCun1|scaffold_203484 (13209-13335) | |
136-280, gnl|panTro1|chr13 (97410253-97410379) | |
136-280, gnl|panTro1|chr22 (37567218-37567403) | |
136-280, gnl|rheMac2|chr12 (70579152-70579279) | |
136-280, gnl|rheMac2|chr3 (9376357-9376172) | |
136-280, gnl|rn3|chr11 (34844907-34845085) | |
136-280, gnl|rn3|chr3 (81709618-81709734) | |
136-280, gnl|tetNig1|chr7 (10223642-10223483) | |
136-280, gnl|tetNig1|chr7 (10223627-10223507) | |
136-280, gnl|xenTro1|scaffold_692 (600045-600211) | |
585-738, gnl|bosTau2|chr1 (99548811-99548658) | |
585-738, gnl|canFam2|chr31 (34503812-34503923) | |
585-738, gnl|danRer3|chrNA (176067229-176067120) | |
585-738, gnl|dasNov1|scaffold_13392 (6256-6367) | |
585-738, gnl|fr1|chrUn (196290000-196289891) | |
585-738, gnl|hg17|chr2 (207376973-207377064) | |
585-738, gnl|Hg17|chr21 (37522546-37522393) | |
585-738, gnl|loxAfr1|scaffold_36468 (9464-9575) | |
585-738, gnl|mm7|chr12 (91545424-91545536) | |
585-738, gnl|Mm7|chr16 (94794044-94793891) | |
585-738, gnl|monDom2|scaffold_16 (49736468-49736579) | |
585-738, gnl|oryCun1|scaffold_187110 (840-951) | |
585-738, gnl|panTro1|chr13 (97409825-97409916) | |
585-738, gnl|rheMac2|chr12 (70578716-70578807) | |
585-738, gnl|rn3|chr3 (81709153-81709262) | |
585-738, gnl|tetNig1|chr7 (10224501-10224392) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nje (0.33184) | |
ecc (0.115035) | |
jej (0.0989218) |