Non-Coding RNA Search

Ss1.1-Pig1-132B11.5

Sequence:


               
               GTTTTATAAAGGTAATTTATATTTTACTAAAGTCTTCCCTAACACTTACCATTGCCTTTG
CTGTATTTGGGTACTAGTCACCTAAATATTTACAACGTTGGTCAGGTCATTCTGGGATTT
TTGCCTTAACTTTTCAGGAAATATGCAGTGGGCTTTGTCCACCACTCTTTAATATTACCC
CATAATTCAGGGTTGATAGTTTCACTAAAAGCATTAGGACTTTTCTTATTCTCATTAGTT
AAGAAAAATATTTCTAAATATATCCTATCATAGGATACACACATGATAGTGCAAAGAGCG
TTTCTTCAGAAATCCTGGAAGATAGTGAATCAACGCCAAATAAAGACATGAAAAAATCGA
CGAAGGTTTTCCTCTTTAAAAGGATGTCCTTGACAAGTCAGAAAAGTATGGAGAATATTG
AGCCACTCCCAGAAATAAAACCAGTAGGAGATCAAATAGTTTTTAAAAGAAATAAGAAAG
ATGCCAGCCAGAACCACATGGGGCAAAATCATCAGGATACCTCACCCCCAAATATGGCGA
GAAGGTCAAAATCTTGTACAGTACTATGAATGTATATTTATGCTTTCCTGATCACCAAGC
ACATCATAATTTATACTTGAAAAACATTTGCGTTCTGAAGGAAAGTTTCTGATAACAAGC
TTAATAAGCTTTTAAAGATATAACTTAATAATATGTTTTATTTGGTTTGAATATTACGAC
CCGTTTTGATATTTATTTAAATGCTCATATTTTTGACAAGCAATTTCAAAATATGTATCT
CTCAAACTCTCCTTCAAGTGTTGTGGCCTTAACTGTTCAGTGTTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTATAAAGGTAATTTATATTTTACTAAAGTCTTCCCTAACACTTACCATTGCCTTTG
CTGTATTTGGGTACTAGTCACCTAAATATTTACAACGTTGGTCAGGTCATTCTGGGATTT
TTGCCTTAACTTTTCAGGAAATATGCAGTGGGCTTTGTCCACCACTCTTTAATATTACCC
CATAATTCAGGGTTGATAGTTTCACTAAAAGCATTAGGACTTTTCTTATTCTCATTAGTT
AAGAAAAATATTTCTAAATATATCCTATCATAGGATACACACATGATAGTGCAAAGAGCG
TTTCTTCAGAAATCCTGGAAGATAGTGAATCAACGCCAAATAAAGACATGAAAAAATCGA
CGAAGGTTTTCCTCTTTAAAAGGATGTCCTTGACAAGTCAGAAAAGTATGGAGAATATTG
AGCCACTCCCAGAAATAAAACCAGTAGGAGATCAAATAGTTTTTAAAAGAAATAAGAAAG
ATGCCAGCCAGAACCACATGGGGCAAAATCATCAGGATACCTCACCCCCAAATATGGCGA
GAAGGTCAAAATCTTGTACAGTACTATGAATGTATATTTATGCTTTCCTGATCACCAAGC
ACATCATAATTTATACTTGAAAAACATTTGCGTTCTGAAGGAAAGTTTCTGATAACAAGC
TTAATAAGCTTTTAAAGATATAACTTAATAATATGTTTTATTTGGTTTGAATATTACGAC
CCGTTTTGATATTTATTTAAATGCTCATATTTTTGACAAGCAATTTCAAAATATGTATCT
CTCAAACTCTCCTTCAAGTGTTGTGGCCTTAACTGTTCAGTGTTGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55662717|ref|XP_521004.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55662717|ref|XP_521004.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               44-360, gnl|bosTau2|chrX (31528738-31528425)
               

               
               44-360, gnl|Hg17|chrX (37889192-37888858)
               

               
               44-360, gnl|Mm7|chrX (8596066-8595754)
               


               
               364-828, gnl|bosTau2|chrX (31519416-31518959)
               

               
               364-828, gnl|Hg17|chrX (37885304-37884847)
               

               
               364-828, gnl|Mm7|chrX (8592032-8591577)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-360, gnl|bosTau2|chrX (31528738-31528425)
               

               
               44-360, gnl|Hg17|chrX (37889192-37888858)
               

               
               44-360, gnl|Mm7|chrX (8596066-8595754)
               


               
               364-828, gnl|bosTau2|chrX (31519416-31518959)
               

               
               364-828, gnl|Hg17|chrX (37885304-37884847)
               

               
               364-828, gnl|Mm7|chrX (8592032-8591577)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.58548)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

	44-360, gnl\|bosTau2\|chrX (31528738-31528425)
	44-360, gnl\|Hg17\|chrX (37889192-37888858)
	44-360, gnl\|Mm7\|chrX (8596066-8595754)

	364-828, gnl\|bosTau2\|chrX (31519416-31518959)
	364-828, gnl\|Hg17\|chrX (37885304-37884847)
	364-828, gnl\|Mm7\|chrX (8592032-8591577)