Ss1.1-Pig1-132B18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATCAAATACAACTCCAACTCGGGCTTCGTCCGTGATGACAACGTGCGCCTGACGCCGC AGGCCTTCAGCCACTTCACCTTTGAGCGTTCCGGCCACCAGCTGATTGTGGTGGACATCC AGGGTTGTGGGCGACCTCTACACCGACCCGCAGATCCACACCGAGAGGGGCACTGACTTT GGAGATGGCAACCTAGGTGTCCGTGGGATGGCTCTCTTCTTCCACTCTCATGCCTGCAAC CGGATTTGCAAGAGTATGGGCCTCGCTCCCTTTGACCTCTCCCCGAGAGAGAGGGACGCA GTGAATCAGAACACCAAGCTCCTGCAATCAGCCAAGACCATCTTGAGGGGGACAGAGGAG AAGTGTGGGAGCCCCCGGGTGAGGACCCTCTCTGGGAGCCGGCCCCCCCTGCTCCTTCGC CTCTCAGAGAATTCTGGCGACGAGAACATGAGTGATGTGACCTTCGACTCTCTCCCTTCC TCGCCATCTTCAGCCACGCCGCACAGCCAGAAACTGGACCACCTCCATTGGCCTGTGTTC AGCGACCTGGATAACGTGGCACCTCGAGACCCTGACCATCTGGACAACCACCGGGACTCT GAGAACAGTGGGGACAGCGGATACCCCAGTGAGAAGCGGGGTGAACTGGATGATCCATAT CCCCAGGAACATGGCCACTCGAATGGTAACCGGAAGTACGAGTCGGATGAAGACAGCCTG GGCAGCGTCGGACGGGTCTGCGTGGAGAAGTGGAACCTCTTCAACGCCTCCCGCCTCCAC CTGCCCAGGCCTTCGGCTGTGGCCCTCGAAGTGCAGAGGCTCAACGCTCTGGACTTTGAG AAGAAAATCGGGAAGTCCATTTAGGGAAAGGTCCACCTGGCCATGGTGCGCTACCACGAG GGCGGGCGCTTCTGCGAGAAGGACGAGGAGTGGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATCAAATACAACTCCAACTCGGGCTTCGTCCGTGATGACAACGTGCGCCTGACGCCGC AGGCCTTCAGCCACTTCACCTTTGAGCGTTCCGGCCACCAGCTGATTGTGGTGGACATCC AGGGTTGTGGGCGACCTCTACACCGACCCGCAGATCCACACCGAGAGGGGCACTGACTTT GGAGATGGCAACCTAGGTGTCCGTGGGATGGCTCTCTTCTTCCACTCTCATGCCTGCAAC CGGATTTGCAAGAGTATGGGCCTCGCTCCCTTTGACCTCTCCCCGAGAGAGAGGGACGCA GTGAATCAGAACACCAAGCTCCTGCAATCAGCCAAGACCATCTTGAGGGGGACAGAGGAG AAGTGTGGGAGCCCCCGGGTGAGGACCCTCTCTGGGAGCCGGCCCCCCCTGCTCCTTCGC CTCTCAGAGAATTCTGGCGACGAGAACATGAGTGATGTGACCTTCGACTCTCTCCCTTCC TCGCCATCTTCAGCCACGCCGCACAGCCAGAAACTGGACCACCTCCATTGGCCTGTGTTC AGCGACCTGGATAACGTGGCACCTCGAGACCCTGACCATCTGGACAACCACCGGGACTCT GAGAACAGTGGGGACAGCGGATACCCCAGTGAGAAGCGGGGTGAACTGGATGATCCATAT CCCCAGGAACATGGCCACTCGAATGGTAACCGGAAGTACGAGTCGGATGAAGACAGCCTG GGCAGCGTCGGACGGGTCTGCGTGGAGAAGTGGAACCTCTTCAACGCCTCCCGCCTCCAC CTGCCCAGGCCTTCGGCTGTGGCCCTCGAAGTGCAGAGGCTCAACGCTCTGGACTTTGAG AAGAAAATCGGGAAGTCCATTTAGGGAAAGGTCCACCTGGCCATGGTGCGCTACCACGAG GGCGGGCGCTTCTGCGAGAAGGACGAGGAGTGGGAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 57-198, gnl|bosTau2|chr25 (18795780-18795640) | |
| 57-198, gnl|canFam2|chr6 (26417997-26417813) | |
| 57-198, gnl|danRer3|chr19 (54934737-54934905) | |
| 57-198, gnl|echTel1|scaffold_256981 (10078-10246) | |
| 57-198, gnl|galGal2|chr14 (10842831-10842994) | |
| 57-198, gnl|hg17|chr16 (22176071-22176240) | |
| 57-198, gnl|Hg17|chr16 (22176067-22176209) | |
| 57-198, gnl|loxAfr1|scaffold_18080 (15810-15978) | |
| 57-198, gnl|mm7|chr7 (116807697-116807869) | |
| 57-198, gnl|Mm7|chr7 (116807696-116807839) | |
| 57-198, gnl|monDom2|scaffold_19 (42705684-42705853) | |
| 57-198, gnl|oryCun1|scaffold_205284 (144775-144973) | |
| 57-198, gnl|panTro1|chr18_random (10338556-10338725) | |
| 57-198, gnl|rheMac2|chr20 (20672049-20672218) | |
| 57-198, gnl|rn3|chr1 (179878807-179878983) | |
| 57-198, gnl|tetNig1|chrUn_random (99913608-99913735) | |
| 57-198, gnl|xenTro1|scaffold_6 (2989722-2989556) | |
| 319-526, gnl|bosTau2|chr25 (18794603-18794396) | |
| 319-526, gnl|canFam2|chr6 (26416762-26416553) | |
| 319-526, gnl|danRer3|chr19 (54938097-54938276) | |
| 319-526, gnl|dasNov1|scaffold_8039 (77451-77239) | |
| 319-526, gnl|galGal2|chr14 (10844334-10844544) | |
| 319-526, gnl|hg17|chr16 (22177293-22177503) | |
| 319-526, gnl|Hg17|chr16 (22177310-22177517) | |
| 319-526, gnl|loxAfr1|scaffold_18080 (17463-17673) | |
| 319-526, gnl|mm7|chr7 (116808847-116809056) | |
| 319-526, gnl|Mm7|chr7 (116808863-116809070) | |
| 319-526, gnl|monDom2|scaffold_19 (42707899-42708110) | |
| 319-526, gnl|oryCun1|scaffold_205284 (146155-146365) | |
| 319-526, gnl|panTro1|chr18_random (10339778-10339988) | |
| 319-526, gnl|rheMac2|chr20 (20673268-20673478) | |
| 319-526, gnl|rn3|chr1 (179880177-179880386) | |
| 319-526, gnl|tetNig1|chrUn_random (99914025-99914187) | |
| 319-526, gnl|xenTro1|scaffold_6 (2988488-2988303) | |
| 561-673, gnl|bosTau2|chr25 (18787829-18787716) | |
| 561-673, gnl|Hg17|chr16 (22181897-22182010) | |
| 561-673, gnl|Mm7|chr7 (116811439-116811551) | |
| 735-872, gnl|bosTau2|chr25 (18785488-18785351) | |
| 735-872, gnl|canFam2|chr6 (26409458-26409316) | |
| 735-872, gnl|danRer3|chr19 (54943872-54944014) | |
| 735-872, gnl|dasNov1|scaffold_71186 (407-265) | |
| 735-872, gnl|echTel1|scaffold_278787 (78687-78545) | |
| 735-872, gnl|galGal2|chr14 (10847163-10847305) | |
| 735-872, gnl|hg17|chr16 (22185208-22185350) | |
| 735-872, gnl|Hg17|chr16 (22185211-22185348) | |
| 735-872, gnl|loxAfr1|scaffold_171273 (763-905) | |
| 735-872, gnl|mm7|chr7 (116813875-116814017) | |
| 735-872, gnl|Mm7|chr7 (116813878-116814015) | |
| 735-872, gnl|monDom2|scaffold_19 (42714632-42714774) | |
| 735-872, gnl|oryCun1|scaffold_121887 (6859-7001) | |
| 735-872, gnl|panTro1|chr18_random (10347698-10347840) | |
| 735-872, gnl|rheMac2|chr20 (20682411-20682553) | |
| 735-872, gnl|rn3|chr1 (179885092-179885234) | |
| 735-872, gnl|tetNig1|chrUn_random (99915375-99915514) | |
| 735-872, gnl|xenTro1|scaffold_6 (2983574-2983435) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-198, gnl|bosTau2|chr25 (18795780-18795640) | |
| 57-198, gnl|canFam2|chr6 (26417997-26417813) | |
| 57-198, gnl|danRer3|chr19 (54934737-54934905) | |
| 57-198, gnl|echTel1|scaffold_256981 (10078-10246) | |
| 57-198, gnl|galGal2|chr14 (10842831-10842994) | |
| 57-198, gnl|hg17|chr16 (22176071-22176240) | |
| 57-198, gnl|Hg17|chr16 (22176067-22176209) | |
| 57-198, gnl|loxAfr1|scaffold_18080 (15810-15978) | |
| 57-198, gnl|mm7|chr7 (116807697-116807869) | |
| 57-198, gnl|Mm7|chr7 (116807696-116807839) | |
| 57-198, gnl|monDom2|scaffold_19 (42705684-42705853) | |
| 57-198, gnl|oryCun1|scaffold_205284 (144775-144973) | |
| 57-198, gnl|panTro1|chr18_random (10338556-10338725) | |
| 57-198, gnl|rheMac2|chr20 (20672049-20672218) | |
| 57-198, gnl|rn3|chr1 (179878807-179878983) | |
| 57-198, gnl|tetNig1|chrUn_random (99913608-99913735) | |
| 57-198, gnl|xenTro1|scaffold_6 (2989722-2989556) | |
| 319-526, gnl|bosTau2|chr25 (18794603-18794396) | |
| 319-526, gnl|canFam2|chr6 (26416762-26416553) | |
| 319-526, gnl|danRer3|chr19 (54938097-54938276) | |
| 319-526, gnl|dasNov1|scaffold_8039 (77451-77239) | |
| 319-526, gnl|galGal2|chr14 (10844334-10844544) | |
| 319-526, gnl|hg17|chr16 (22177293-22177503) | |
| 319-526, gnl|Hg17|chr16 (22177310-22177517) | |
| 319-526, gnl|loxAfr1|scaffold_18080 (17463-17673) | |
| 319-526, gnl|mm7|chr7 (116808847-116809056) | |
| 319-526, gnl|Mm7|chr7 (116808863-116809070) | |
| 319-526, gnl|monDom2|scaffold_19 (42707899-42708110) | |
| 319-526, gnl|oryCun1|scaffold_205284 (146155-146365) | |
| 319-526, gnl|panTro1|chr18_random (10339778-10339988) | |
| 319-526, gnl|rheMac2|chr20 (20673268-20673478) | |
| 319-526, gnl|rn3|chr1 (179880177-179880386) | |
| 319-526, gnl|tetNig1|chrUn_random (99914025-99914187) | |
| 319-526, gnl|xenTro1|scaffold_6 (2988488-2988303) | |
| 561-673, gnl|bosTau2|chr25 (18787829-18787716) | |
| 561-673, gnl|Hg17|chr16 (22181897-22182010) | |
| 561-673, gnl|Mm7|chr7 (116811439-116811551) | |
| 735-872, gnl|bosTau2|chr25 (18785488-18785351) | |
| 735-872, gnl|canFam2|chr6 (26409458-26409316) | |
| 735-872, gnl|danRer3|chr19 (54943872-54944014) | |
| 735-872, gnl|dasNov1|scaffold_71186 (407-265) | |
| 735-872, gnl|echTel1|scaffold_278787 (78687-78545) | |
| 735-872, gnl|galGal2|chr14 (10847163-10847305) | |
| 735-872, gnl|hg17|chr16 (22185208-22185350) | |
| 735-872, gnl|Hg17|chr16 (22185211-22185348) | |
| 735-872, gnl|loxAfr1|scaffold_171273 (763-905) | |
| 735-872, gnl|mm7|chr7 (116813875-116814017) | |
| 735-872, gnl|Mm7|chr7 (116813878-116814015) | |
| 735-872, gnl|monDom2|scaffold_19 (42714632-42714774) | |
| 735-872, gnl|oryCun1|scaffold_121887 (6859-7001) | |
| 735-872, gnl|panTro1|chr18_random (10347698-10347840) | |
| 735-872, gnl|rheMac2|chr20 (20682411-20682553) | |
| 735-872, gnl|rn3|chr1 (179885092-179885234) | |
| 735-872, gnl|tetNig1|chrUn_random (99915375-99915514) | |
| 735-872, gnl|xenTro1|scaffold_6 (2983574-2983435) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| ese (0.126502) |