Non-Coding RNA Search

Ss1.1-Pig1-132C15.5

Sequence:


               
               AGTCTCCAGCTCGGGACAGCGTGGTGGAGGGCCCGGCCTGCCGGCGGGGCAGCCATGGAA
ACGGCGGCGCGGAGGCGGCAGCAACCGGGAGCGGCGGGCGGCCCGGGCCTCGGGACAGCG
TGGTGGAGGGCCCGGCCTGCCGGCGGGGCAGCCATGGAAGCGGCGGCGCGGAGGCGGCAG
CAACCGGGAGCGGCGGGCGGCCCGGGCGCGCAGCCGGGCGCCTCCTTCCTGCAGGCCAGG
CACAGCTCCGTCAAGGCAGATGAGGCTGCCAGCACAGCTCCCTTCCACCTTGATCTCTGG
TTCTACTTCACACTGCAGAACTGGATTCTGGACTTTGGCCGCCCCATTGCCATGCTCATC
GAGCGGTCCCCCCGCACCCTGCCACGCTCCATGATCTACGTCAGCATCATCACCTTTATC
ATGGGCGCCAGCATCCACCTGGTGGGCGACTCCGTAAACCACCGCCTGATCTTCAGCGGC
TACCAGAACCACCTGTCGGTCCGAGAGAACCCTATCATCAAGAATCTCAAGCCAGAGACG
CTGATCGACTCCTTTGAGCTGCTCTACTACTACGACGAGTACCTGGGCCACTCCTTGTGG
TACATCCCCTTCTTCCTCATCCTCTTCATGTACTTCAGCGGCTGCTTCACTCCCACCAAA
ACTGAGAGTGTGATGCCGGGGGCGGCCCTGCTCCTGGTGGTGCCCAGTGGCCTGTACTAC
TGGTACCTGGTCACCGAGGGCCAGATCTTCATCCTCTTCATCTTCACCTTCTTCGCGATG
CTGGCCCTGGTCCTGCACCAGAAGCGCAAGCGCCTCTTCTTGGACAGCAATGGCCTCTTC
CTCTTCTACTCCTTTGCCATCACGCTCCTGCTGGTAGCGCTCTGGGTTGCCTGGCTGTGG
AATGACCCTGTACTAAGGAAGAAGTACCCAGGTGTCATCTACGTCCCTGAGCCCTGGGCC
TTCTACACGCTCCATGTCAGCAGCCGACACTGAGCCCCCGGCCCTGGCTGCTGGTGCTCT
GCCGGGTGGGAGGTGGGCCATTGAGGGTGTCTGAGCATGTGGGTGTGTGTCTGTGTCTGT
CTCATGTGTGCGTGGCTGAGAGCACGGGTGCGTGAGTTTGCGTTGTGCACATGGATGGGG
TGTGTGCGTGTGCTGGCTTGTGCACGTACAGTGAGTGTCACTGTGAGAGTCACTTGTTTT
GGTCAAGTCTCTGCGGTTTGGCTCTTCTCAGGACGGGATCTGGTTTGAGGCAGTGTGTCC
CGGCCAGGCCCTGGGCCCTGTCCTCCTGTGCACCTGACTGGAGTCAGGCCCTCACTCCCA
CTGCTCAGGGCTGTCTCTTCTCCTGGGGGTCTTCCAGTAGCTGCACAAGAGAGGCCTGAG
TGGGGCAGAGGTCAGGAGGGGACTTGGCCTGTCACCCCCTGACCTGGCTCACTGCTCAGA
CCCGCCCCGACCCTGGAGGCCGGATGACACAGGTTACATGAACTTGCTGTGTGTTCATGA
GCAAAGTGCACCCCTCGGGAGGGATGAGTGGTTCTACCCGGCCCCTGCCCCCTCCTACCC
TGGGAGGGTACACACCCCAGATCCTCACCGAACCTCAGGCTGCGGGGAGCCAGAGACCAG
CCCTTCCCCTAACCTGATCTTGGCGCCTGGCAGTGGCTATGCCCCAGCCACGTAGCTCTG
CCAGCAGCTGTCTCTACCCTCTCCCCGCAACCACAGGTTTTTAGTGGCAGCTGGAGGCAG
AGTTCTCCCTACTTGCACTGTGTCCTGAGCCCCTCAGCAGGGACGGGGACATCTTGTCTC
AGCCTGAATCTACACCTTCCCCCACACCAAGGCCCTGCGCCCAGAAGAGGGAGGCCTCAT
CCTGGGACCCCCTCTGCCCCCACCTCCCCAGACACTGGACCAGGTCTCCTCCCACAGCTG
ATCTCCCAGCAGAATCCTGCGGGCGGCTCAGAGGCCCCGCCTCCTCCCCTGTGCTCTCAG
GGAGCCCTGTGCCTCAGATTCTCCTTTCATGTAGGGGTCCCTCCCAGCCCCGTGAGTCCT
GTCTGCTGGCAGCATCTGGGCTGAGGGGTGTGAATAAAGGTGGTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTCCAGCTCGGGACAGCGTGGTGGAGGGCCCGGCCTGCCGGCGGGGCAGCCATGGAA
ACGGCGGCGCGGAGGCGGCAGCAACCGGGAGCGGCGGGCGGCCCGGGCCTCGGGACAGCG
TGGTGGAGGGCCCGGCCTGCCGGCGGGGCAGCCATGGAAGCGGCGGCGCGGAGGCGGCAG
CAACCGGGAGCGGCGGGCGGCCCGGGCGCGCAGCCGGGCGCCTCCTTCCTGCAGGCCAGG
CACAGCTCCGTCAAGGCAGATGAGGCTGCCAGCACAGCTCCCTTCCACCTTGATCTCTGG
TTCTACTTCACACTGCAGAACTGGATTCTGGACTTTGGCCGCCCCATTGCCATGCTCATC
GAGCGGTCCCCCCGCACCCTGCCACGCTCCATGATCTACGTCAGCATCATCACCTTTATC
ATGGGCGCCAGCATCCACCTGGTGGGCGACTCCGTAAACCACCGCCTGATCTTCAGCGGC
TACCAGAACCACCTGTCGGTCCGAGAGAACCCTATCATCAAGAATCTCAAGCCAGAGACG
CTGATCGACTCCTTTGAGCTGCTCTACTACTACGACGAGTACCTGGGCCACTCCTTGTGG
TACATCCCCTTCTTCCTCATCCTCTTCATGTACTTCAGCGGCTGCTTCACTCCCACCAAA
ACTGAGAGTGTGATGCCGGGGGCGGCCCTGCTCCTGGTGGTGCCCAGTGGCCTGTACTAC
TGGTACCTGGTCACCGAGGGCCAGATCTTCATCCTCTTCATCTTCACCTTCTTCGCGATG
CTGGCCCTGGTCCTGCACCAGAAGCGCAAGCGCCTCTTCTTGGACAGCAATGGCCTCTTC
CTCTTCTACTCCTTTGCCATCACGCTCCTGCTGGTAGCGCTCTGGGTTGCCTGGCTGTGG
AATGACCCTGTACTAAGGAAGAAGTACCCAGGTGTCATCTACGTCCCTGAGCCCTGGGCC
TTCTACACGCTCCATGTCAGCAGCCGACACTGAGCCCCCGGCCCTGGCTGCTGGTGCTCT
GCCGGGTGGGAGGTGGGCCATTGAGGGTGTCTGAGCATGTGGGTGTGTGTCTGTGTCTGT
CTCATGTGTGCGTGGCTGAGAGCACGGGTGCGTGAGTTTGCGTTGTGCACATGGATGGGG
TGTGTGCGTGTGCTGGCTTGTGCACGTACAGTGAGTGTCACTGTGAGAGTCACTTGTTTT
GGTCAAGTCTCTGCGGTTTGGCTCTTCTCAGGACGGGATCTGGTTTGAGGCAGTGTGTCC
CGGCCAGGCCCTGGGCCCTGTCCTCCTGTGCACCTGACTGGAGTCAGGCCCTCACTCCCA
CTGCTCAGGGCTGTCTCTTCTCCTGGGGGTCTTCCAGTAGCTGCACAAGAGAGGCCTGAG
TGGGGCAGAGGTCAGGAGGGGACTTGGCCTGTCACCCCCTGACCTGGCTCACTGCTCAGA
CCCGCCCCGACCCTGGAGGCCGGATGACACAGGTTACATGAACTTGCTGTGTGTTCATGA
GCAAAGTGCACCCCTCGGGAGGGATGAGTGGTTCTACCCGGCCCCTGCCCCCTCCTACCC
TGGGAGGGTACACACCCCAGATCCTCACCGAACCTCAGGCTGCGGGGAGCCAGAGACCAG
CCCTTCCCCTAACCTGATCTTGGCGCCTGGCAGTGGCTATGCCCCAGCCACGTAGCTCTG
CCAGCAGCTGTCTCTACCCTCTCCCCGCAACCACAGGTTTTTAGTGGCAGCTGGAGGCAG
AGTTCTCCCTACTTGCACTGTGTCCTGAGCCCCTCAGCAGGGACGGGGACATCTTGTCTC
AGCCTGAATCTACACCTTCCCCCACACCAAGGCCCTGCGCCCAGAAGAGGGAGGCCTCAT
CCTGGGACCCCCTCTGCCCCCACCTCCCCAGACACTGGACCAGGTCTCCTCCCACAGCTG
ATCTCCCAGCAGAATCCTGCGGGCGGCTCAGAGGCCCCGCCTCCTCCCCTGTGCTCTCAG
GGAGCCCTGTGCCTCAGATTCTCCTTTCATGTAGGGGTCCCTCCCAGCCCCGTGAGTCCT
GTCTGCTGGCAGCATCTGGGCTGAGGGGTGTGAATAAAGGTGGTGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22760400|dbj|BAC11181.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22760400|dbj|BAC11181.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1955-2071, - strand, RNAz p=0.980903

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1955-2071, - strand, RNAz p=0.980903

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               354-543, gnl|bosTau2|chr10 (9898717-9898906)
               

               
               354-543, gnl|Hg17|chr15 (66291256-66291067)
               

               
               354-543, gnl|Mm7|chr9 (62875320-62875509)
               


               
               722-1128, gnl|bosTau2|chr10 (9902523-9902927)
               

               
               722-1128, gnl|Mm7|chr9 (62878971-62879314)
               


               
               1513-1695, gnl|bosTau2|chr10 (9903631-9903825)
               

               
               1513-1695, gnl|Hg17|chr15 (66286940-66286744)
               


               
               1955-2087, gnl|bosTau2|chr10 (9904125-9904255)
               

               
               1955-2087, gnl|Mm7|chr9 (62880226-62880351)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               354-543, gnl|bosTau2|chr10 (9898717-9898906)
               

               
               354-543, gnl|Hg17|chr15 (66291256-66291067)
               

               
               354-543, gnl|Mm7|chr9 (62875320-62875509)
               


               
               722-1128, gnl|bosTau2|chr10 (9902523-9902927)
               

               
               722-1128, gnl|Mm7|chr9 (62878971-62879314)
               


               
               1513-1695, gnl|bosTau2|chr10 (9903631-9903825)
               

               
               1513-1695, gnl|Hg17|chr15 (66286940-66286744)
               


               
               1955-2087, gnl|bosTau2|chr10 (9904125-9904255)
               

               
               1955-2087, gnl|Mm7|chr9 (62880226-62880351)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               col (0.195008)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	354-543, gnl\|bosTau2\|chr10 (9898717-9898906)
	354-543, gnl\|Hg17\|chr15 (66291256-66291067)
	354-543, gnl\|Mm7\|chr9 (62875320-62875509)

	722-1128, gnl\|bosTau2\|chr10 (9902523-9902927)
	722-1128, gnl\|Mm7\|chr9 (62878971-62879314)

	1513-1695, gnl\|bosTau2\|chr10 (9903631-9903825)
	1513-1695, gnl\|Hg17\|chr15 (66286940-66286744)

	1955-2087, gnl\|bosTau2\|chr10 (9904125-9904255)
	1955-2087, gnl\|Mm7\|chr9 (62880226-62880351)

	col (0.195008)
	che (0.136314)
	pla (0.133672)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)