Non-Coding RNA Search

Ss1.1-Pig1-132E24.5

Sequence:


               
               TGAAGGCTGGTGCCGACATCCATGCAGAGAACGAGGAGCCCCTGTGCCCACTGCCTTCGC
CCCCAACCTCTGGTAGTGACTCAGATTCCGAGGGCCCTGAGAGGGACACCAAAGGCAGCT
TCCGGGGCCACACACCTCTTGACCTCACTCGCAGCAGCAAGGTGAAGACCTTGCTGCTAA
ATGCTGCTCAGGACACCATGGCGCCCCCGCTGACCCCGCCTAGCCCTGCAGGTCCAGAGA
TGCCACTTGAGGATACAGTTCTACAGAACCTGGAGCATCTGCTAGACAGGCCAGGAGCCC
AGGGCAGCTGGGCAGAGCTGGCAGAACGGCTGGGGCTGCGCAGTCTGGTGGACACATATC
GAAAGACAGCCTCACCCAGCGGCAGCCTCCTGCGCAGTTACAAGCTGGCTGGTGGGGATT
TGGCGGGCTTGCTGGATGCCCTGTCTGACATGGGCCTGGAGGAGGGAGTGAGGCTGCTGA
GGGGTCCTGAGACACGAGAGAAGCTGCCTAGCACAGAGGTGAAGGAGGACAGTGCATATG
GAAGCCAGTCGGTGGAACAGGAAGCAGAGAAGCTGGGCCCACCCCCTGAGCCACCAGGAG
GGCTCTGCCATGGGCACCCCCAGCCTCAGGTGCACTGAACTGCCACCCACCCACTAGCCC
CTTTCCTGGGCTCCTCTGTACAGCGTCCCCACCTTTTCCAGTTCTTATTTAACACCCCAT
GCCCACCCCTCCTCCACTGGGGCAAATAAAAGATTCTCATGGGAAAGGGAGGGGGCCTGG
CTCCCTCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGGCTGGTGCCGACATCCATGCAGAGAACGAGGAGCCCCTGTGCCCACTGCCTTCGC
CCCCAACCTCTGGTAGTGACTCAGATTCCGAGGGCCCTGAGAGGGACACCAAAGGCAGCT
TCCGGGGCCACACACCTCTTGACCTCACTCGCAGCAGCAAGGTGAAGACCTTGCTGCTAA
ATGCTGCTCAGGACACCATGGCGCCCCCGCTGACCCCGCCTAGCCCTGCAGGTCCAGAGA
TGCCACTTGAGGATACAGTTCTACAGAACCTGGAGCATCTGCTAGACAGGCCAGGAGCCC
AGGGCAGCTGGGCAGAGCTGGCAGAACGGCTGGGGCTGCGCAGTCTGGTGGACACATATC
GAAAGACAGCCTCACCCAGCGGCAGCCTCCTGCGCAGTTACAAGCTGGCTGGTGGGGATT
TGGCGGGCTTGCTGGATGCCCTGTCTGACATGGGCCTGGAGGAGGGAGTGAGGCTGCTGA
GGGGTCCTGAGACACGAGAGAAGCTGCCTAGCACAGAGGTGAAGGAGGACAGTGCATATG
GAAGCCAGTCGGTGGAACAGGAAGCAGAGAAGCTGGGCCCACCCCCTGAGCCACCAGGAG
GGCTCTGCCATGGGCACCCCCAGCCTCAGGTGCACTGAACTGCCACCCACCCACTAGCCC
CTTTCCTGGGCTCCTCTGTACAGCGTCCCCACCTTTTCCAGTTCTTATTTAACACCCCAT
GCCCACCCCTCCTCCACTGGGGCAAATAAAAGATTCTCATGGGAAAGGGAGGGGGCCTGG
CTCCCTCCCCAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               514-632, - strand, RNAz p=0.797735
               

               
               673-792, - strand, RNAz p=0.943408

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               514-632, - strand, RNAz p=0.797735
               

               
               673-792, - strand, RNAz p=0.943408

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               519-671, - strand, RNAmicro p=0.974691

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               519-671, - strand, RNAmicro p=0.974691

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               224-404, gnl|bosTau2|chr26 (14124117-14123937)
               

               
               224-404, gnl|Hg17|chr10 (104151484-104151664)
               

               
               224-404, gnl|Mm7|chr19 (46207908-46208088)
               


               
               514-792, gnl|bosTau2|chr26 (14123613-14123339)
               

               
               514-792, gnl|Hg17|chr10 (104151999-104152267)
               

               
               514-792, gnl|Mm7|chr19 (46208404-46208648)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               224-404, gnl|bosTau2|chr26 (14124117-14123937)
               

               
               224-404, gnl|Hg17|chr10 (104151484-104151664)
               

               
               224-404, gnl|Mm7|chr19 (46207908-46208088)
               


               
               514-792, gnl|bosTau2|chr26 (14123613-14123339)
               

               
               514-792, gnl|Hg17|chr10 (104151999-104152267)
               

               
               514-792, gnl|Mm7|chr19 (46208404-46208648)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.390016)
               

               
               clu (0.358938)
               

               
               nco (0.161734)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               clu (0.358938)
               

               
               nco (0.161734)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	514-632, - strand, RNAz p=0.797735
	673-792, - strand, RNAz p=0.943408

	224-404, gnl\|bosTau2\|chr26 (14124117-14123937)
	224-404, gnl\|Hg17\|chr10 (104151484-104151664)
	224-404, gnl\|Mm7\|chr19 (46207908-46208088)

	514-792, gnl\|bosTau2\|chr26 (14123613-14123339)
	514-792, gnl\|Hg17\|chr10 (104151999-104152267)
	514-792, gnl\|Mm7\|chr19 (46208404-46208648)

	col (0.390016)
	clu (0.358938)
	nco (0.161734)
	cly (0.120642)
	med (0.116252)