Non-Coding RNA Search

Ss1.1-Pig1-132G24.5

Sequence:


               
               GGGCATCGAGGAGAATGTGCTGCGGCTTCAGGGCCAGGAGCGGGCGCCCAGCACCGAGGC
CAAGCACCGCAACACCAGCAGCATCGCCAGCTGGTTCGGCCTTAAGAAGAGCAAGCTGCC
AGCGCTGAACCGCCGCACAGAGGCCACCAAGGGCAAGGAAGGGGCCAGCGGAGGCTCCCC
GCTCCGGAAGGAGGTCAAAGTGGAAGCCCGGAAGCTGGAGGCCGAGAGCCTCAACATCTC
CAAGCTGATGGCGAAGGCGGAAGACCTGCGCCGGGCGCTGGAGGAGGAGAAGGCCTACCT
GAGCAGCAGGGCCCGGCCGCGGCCTGGAGGCCCAGTGCCAGGGCCCACTGCAGGCCTGGG
GCAGGTGCAGGGCCAGCTGGCCGGCATGTACCAGGGGGCGGACACCTTCATGCAGCAACT
GCTCAACAGGGTGGATGGCAAGGAGCTGCCCCCTAAGAGCTGGCGGGAGCCCAAACCTGA
GTATGGTGATTTCCAGCCAGTGGCCTCTGACCCTAAGAACCCCTGGCCAGCCTGCGGGCC
CCGAAATGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCATCGAGGAGAATGTGCTGCGGCTTCAGGGCCAGGAGCGGGCGCCCAGCACCGAGGC
CAAGCACCGCAACACCAGCAGCATCGCCAGCTGGTTCGGCCTTAAGAAGAGCAAGCTGCC
AGCGCTGAACCGCCGCACAGAGGCCACCAAGGGCAAGGAAGGGGCCAGCGGAGGCTCCCC
GCTCCGGAAGGAGGTCAAAGTGGAAGCCCGGAAGCTGGAGGCCGAGAGCCTCAACATCTC
CAAGCTGATGGCGAAGGCGGAAGACCTGCGCCGGGCGCTGGAGGAGGAGAAGGCCTACCT
GAGCAGCAGGGCCCGGCCGCGGCCTGGAGGCCCAGTGCCAGGGCCCACTGCAGGCCTGGG
GCAGGTGCAGGGCCAGCTGGCCGGCATGTACCAGGGGGCGGACACCTTCATGCAGCAACT
GCTCAACAGGGTGGATGGCAAGGAGCTGCCCCCTAAGAGCTGGCGGGAGCCCAAACCTGA
GTATGGTGATTTCCAGCCAGTGGCCTCTGACCCTAAGAACCCCTGGCCAGCCTGCGGGCC
CCGAAATGGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-399, + strand, RNAz p=0.902544

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-399, + strand, RNAz p=0.902544

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               241-382, - strand, RNAmicro p=0.994768
               

               
               202-314, + strand, RNAmicro p=0.985951
               

               
               74-161, - strand, RNAmicro p=0.921107

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               241-382, - strand, RNAmicro p=0.994768
               

               
               202-314, + strand, RNAmicro p=0.985951
               

               
               74-161, - strand, RNAmicro p=0.921107

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC033253, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC033253, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-430, gnl|bosTau2|chr5 (21608261-21608687)
               

               
               1-430, gnl|Hg17|chr12 (48475243-48474814)
               

               
               1-430, gnl|Mm7|chr15 (99411223-99410797)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-430, gnl|bosTau2|chr5 (21608261-21608687)
               

               
               1-430, gnl|Hg17|chr12 (48475243-48474814)
               

               
               1-430, gnl|Mm7|chr15 (99411223-99410797)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	241-382, - strand, RNAmicro p=0.994768
	202-314, + strand, RNAmicro p=0.985951
	74-161, - strand, RNAmicro p=0.921107

	1-430, gnl\|bosTau2\|chr5 (21608261-21608687)
	1-430, gnl\|Hg17\|chr12 (48475243-48474814)
	1-430, gnl\|Mm7\|chr15 (99411223-99410797)