Ss1.1-Pig1-132H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGGGGGTGAGAGAGAAGGCTCCTGCCACTTCCCCGCCTGGCTGTCTCCAGAGGGACC CTCGGTCCGGCCCTCCAGCCATGGACCCGGCTAAGGAGTATGCCGAGTGCCCTGCCCGAG GAAAGTGCCCTGTGTTCTTGGCAATGAGCTCAGGGACTGTCCGCTACGCTCCATCAGGTC TGGGCCCTGCACTTGAGGGGAACTTGGGAGAGCAGCTCTGGGACACAGACAGCCAATCCC ACCCGGACGAGGGCCACCGGCCGCCCCTTGAAGCTGTCCCGGTCCCCTGGAAGAGCCACA GGGAGTCCCCGGGAGGCCTGGCAGAGACCCCTGCAGGGGAGGAGGCCCAAGGCGAGGAGG GCCCTGCGGCCACCCAGCTGGACGTGTCGCGCCTGCGCAGCTCTTCCATGGAGATCCGCG AGAAGGGCTCAGAGTTCCTCAGAGAGGAGCTGCACAAAGCCCAGAAGGAGCTGAAGCTGA AGGATGAGGAGTGTGAGCGGCTGTCCAAGGTGCGGGAGCAGCTGGAGCAGGAGCTGGAGG AGCTGACGGCCAGCTTATTCGAGGAAGCCCACAAGATGGTGCGAGAAGCCAACATGAAGC AGGCGGCTTCAGAGAAGCAGCTGAAGGAGGCGCGAGGCAAGATCGACATGCTGCAGGCAG AGGTGACAGCCTTGAAGACACTGGTCATCACGTCCACACCAGCCTCTCCCAACCGCGAGC TCCACCCGCAGCTGCTCAGCTCCACCAAGGCTGGACCCCGCAAGGGTCACTTGCGCCATA AGAGCACCAGCAGCGCCCTCTGCCCCGCCGTGTGCCCGGCTGCAGGACACGCCCTCACCC CCGACAAGGAAGGCAAAGAGGTGGACGCCACCCTGTTTGCAGAGTTCCAGGCTTGGAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGGGGGTGAGAGAGAAGGCTCCTGCCACTTCCCCGCCTGGCTGTCTCCAGAGGGACC CTCGGTCCGGCCCTCCAGCCATGGACCCGGCTAAGGAGTATGCCGAGTGCCCTGCCCGAG GAAAGTGCCCTGTGTTCTTGGCAATGAGCTCAGGGACTGTCCGCTACGCTCCATCAGGTC TGGGCCCTGCACTTGAGGGGAACTTGGGAGAGCAGCTCTGGGACACAGACAGCCAATCCC ACCCGGACGAGGGCCACCGGCCGCCCCTTGAAGCTGTCCCGGTCCCCTGGAAGAGCCACA GGGAGTCCCCGGGAGGCCTGGCAGAGACCCCTGCAGGGGAGGAGGCCCAAGGCGAGGAGG GCCCTGCGGCCACCCAGCTGGACGTGTCGCGCCTGCGCAGCTCTTCCATGGAGATCCGCG AGAAGGGCTCAGAGTTCCTCAGAGAGGAGCTGCACAAAGCCCAGAAGGAGCTGAAGCTGA AGGATGAGGAGTGTGAGCGGCTGTCCAAGGTGCGGGAGCAGCTGGAGCAGGAGCTGGAGG AGCTGACGGCCAGCTTATTCGAGGAAGCCCACAAGATGGTGCGAGAAGCCAACATGAAGC AGGCGGCTTCAGAGAAGCAGCTGAAGGAGGCGCGAGGCAAGATCGACATGCTGCAGGCAG AGGTGACAGCCTTGAAGACACTGGTCATCACGTCCACACCAGCCTCTCCCAACCGCGAGC TCCACCCGCAGCTGCTCAGCTCCACCAAGGCTGGACCCCGCAAGGGTCACTTGCGCCATA AGAGCACCAGCAGCGCCCTCTGCCCCGCCGTGTGCCCGGCTGCAGGACACGCCCTCACCC CCGACAAGGAAGGCAAAGAGGTGGACGCCACCCTGTTTGCAGAGTTCCAGGCTTGGAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 281-468, + strand, RNAz p=0.763841 | |
| 281-468, - strand, RNAz p=0.763841 | |
| 281-468, + strand, RNAz p=0.925886 | |
| 281-468, - strand, RNAz p=0.925886 | |
| 675-863, - strand, RNAz p=0.795763 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 281-468, + strand, RNAz p=0.763841 | |
| 281-468, - strand, RNAz p=0.763841 | |
| 281-468, + strand, RNAz p=0.925886 | |
| 281-468, - strand, RNAz p=0.925886 | |
| 675-863, - strand, RNAz p=0.795763 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-232, gnl|bosTau2|chr29 (31567264-31567494) | |
| 1-232, gnl|canFam2|chr18 (57536010-57535657) | |
| 1-232, gnl|dasNov1|scaffold_51898 (4492-4829) | |
| 1-232, gnl|hg17|chr11 (61444053-61444403) | |
| 1-232, gnl|Hg17|chr11 (61444319-61444089) | |
| 1-232, gnl|loxAfr1|scaffold_4473 (72667-72323) | |
| 1-232, gnl|mm7|chr19 (9695454-9695103) | |
| 1-232, gnl|Mm7|chr19 (9695187-9695410) | |
| 1-232, gnl|panTro1|chr9 (62419156-62419506) | |
| 1-232, gnl|rheMac2|chr14 (12109189-12108839) | |
| 1-232, gnl|rn3|chr1 (212621739-212621391) | |
| 281-468, gnl|bosTau2|chr29 (31578957-31579144) | |
| 281-468, gnl|canFam2|chr18 (57547009-57546874) | |
| 281-468, gnl|danRer3|chr9 (38957970-38958107) | |
| 281-468, gnl|dasNov1|scaffold_197738 (342-207) | |
| 281-468, gnl|echTel1|scaffold_300191 (3671-3791) | |
| 281-468, gnl|fr1|chrUn (180163447-180163573) | |
| 281-468, gnl|galGal2|chr5 (14143342-14143476) | |
| 281-468, gnl|hg17|chr11 (61432098-61432233) | |
| 281-468, gnl|Hg17|chr11 (61432288-61432101) | |
| 281-468, gnl|loxAfr1|scaffold_4473 (84751-84616) | |
| 281-468, gnl|mm7|chr19 (9706916-9706781) | |
| 281-468, gnl|Mm7|chr19 (9706721-9706911) | |
| 281-468, gnl|panTro1|chr9 (62407184-62407319) | |
| 281-468, gnl|rheMac2|chr14 (12121026-12120891) | |
| 281-468, gnl|rn3|chr1 (212633327-212633192) | |
| 281-468, gnl|tetNig1|chr13 (10978399-10978245) | |
| 281-468, gnl|xenTro1|scaffold_2106 (20819-20713) | |
| 636-863, gnl|bosTau2|chr29 (31580619-31580846) | |
| 636-863, gnl|Hg17|chr11 (61430738-61430511) | |
| 636-863, gnl|Mm7|chr19 (9708404-9708631) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-232, gnl|bosTau2|chr29 (31567264-31567494) | |
| 1-232, gnl|canFam2|chr18 (57536010-57535657) | |
| 1-232, gnl|dasNov1|scaffold_51898 (4492-4829) | |
| 1-232, gnl|hg17|chr11 (61444053-61444403) | |
| 1-232, gnl|Hg17|chr11 (61444319-61444089) | |
| 1-232, gnl|loxAfr1|scaffold_4473 (72667-72323) | |
| 1-232, gnl|mm7|chr19 (9695454-9695103) | |
| 1-232, gnl|Mm7|chr19 (9695187-9695410) | |
| 1-232, gnl|panTro1|chr9 (62419156-62419506) | |
| 1-232, gnl|rheMac2|chr14 (12109189-12108839) | |
| 1-232, gnl|rn3|chr1 (212621739-212621391) | |
| 281-468, gnl|bosTau2|chr29 (31578957-31579144) | |
| 281-468, gnl|canFam2|chr18 (57547009-57546874) | |
| 281-468, gnl|danRer3|chr9 (38957970-38958107) | |
| 281-468, gnl|dasNov1|scaffold_197738 (342-207) | |
| 281-468, gnl|echTel1|scaffold_300191 (3671-3791) | |
| 281-468, gnl|fr1|chrUn (180163447-180163573) | |
| 281-468, gnl|galGal2|chr5 (14143342-14143476) | |
| 281-468, gnl|hg17|chr11 (61432098-61432233) | |
| 281-468, gnl|Hg17|chr11 (61432288-61432101) | |
| 281-468, gnl|loxAfr1|scaffold_4473 (84751-84616) | |
| 281-468, gnl|mm7|chr19 (9706916-9706781) | |
| 281-468, gnl|Mm7|chr19 (9706721-9706911) | |
| 281-468, gnl|panTro1|chr9 (62407184-62407319) | |
| 281-468, gnl|rheMac2|chr14 (12121026-12120891) | |
| 281-468, gnl|rn3|chr1 (212633327-212633192) | |
| 281-468, gnl|tetNig1|chr13 (10978399-10978245) | |
| 281-468, gnl|xenTro1|scaffold_2106 (20819-20713) | |
| 636-863, gnl|bosTau2|chr29 (31580619-31580846) | |
| 636-863, gnl|Hg17|chr11 (61430738-61430511) | |
| 636-863, gnl|Mm7|chr19 (9708404-9708631) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| med (0.116252) |