Non-Coding RNA Search

Ss1.1-Pig1-132H14.5

Sequence:


               
               ACACCCTTCCACCTCATCATGTCTCGACGAAGCCAGCGCCTGACGCGCTTCTCCCAGGGT
GATGACGACGGCGGCAGCAGCAGCAGTGGAGGGAGCTCGGTGATGGGGAGTCAGAGCACC
CTGTTTAAAGACAGCCCTCTCAGGACCTTGAAGAGGAAGTCCAGCAACGTGAAGCGTCTG
TCCCCAGTGCCGCAGCTGGGCCCCTCCTCCGACGCGCACACCTACTACAGCGAGTCTGTG
GTCAGGGAGTCCTACATCGGCAGCCCCCGGGCCGCCTCCCTCGCCGCCTCCCTCACCAGG
GGCTCCATCCTCGACGACCAGCTGCGTGGCGACCCCTACTGGAGTTACTCCCAGACAGAC
CAGCGGGGTTCAGGTTCACGACTAAGGAATGCTGTCTCTCGGGTGGGCTCTTTGTTCTGG
ATGGTGGTCACTTCTCCAGGCCGGCTCTTCGGACTCCTGTACTGGTGGATCGGCACCACC
TGGTACCGCCTGACCACAGCTGCCTCCCTCCTCGACGTCTTCGTCTTAACCAGGCGCATC
TCATCCCCCAAGACGTTCCTGTGGTTCCTTTTGCTCCTGCTGCTTCTGACCGGCCTGACC
TACGGAGCGTGGTATTTCTACCCCTATGGACTGCAGATGTTCCACCCTGCCGTGGTTTCC
TGGTGGGCCTCGAAGGGCAGCGGCGGGCAGCATGAGGTGTGGGCGTCCAGAGACTCGTCC
CCACATTTCCAGGCTGAGCAGCGCATTCTGTCCCGGGTACACTCTCTGGAGCGGCGCCTG
GAAGCTCTTGCTGCCGAGTTTTCCTCCAACTGGCAGAAGGAGGCCCTGCGGCTGGAACGT
TTGGAGCTGCGGCAAGGAGCTGGGGGGCAGGGAGGTAGCGGTGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCCTTCCACCTCATCATGTCTCGACGAAGCCAGCGCCTGACGCGCTTCTCCCAGGGT
GATGACGACGGCGGCAGCAGCAGCAGTGGAGGGAGCTCGGTGATGGGGAGTCAGAGCACC
CTGTTTAAAGACAGCCCTCTCAGGACCTTGAAGAGGAAGTCCAGCAACGTGAAGCGTCTG
TCCCCAGTGCCGCAGCTGGGCCCCTCCTCCGACGCGCACACCTACTACAGCGAGTCTGTG
GTCAGGGAGTCCTACATCGGCAGCCCCCGGGCCGCCTCCCTCGCCGCCTCCCTCACCAGG
GGCTCCATCCTCGACGACCAGCTGCGTGGCGACCCCTACTGGAGTTACTCCCAGACAGAC
CAGCGGGGTTCAGGTTCACGACTAAGGAATGCTGTCTCTCGGGTGGGCTCTTTGTTCTGG
ATGGTGGTCACTTCTCCAGGCCGGCTCTTCGGACTCCTGTACTGGTGGATCGGCACCACC
TGGTACCGCCTGACCACAGCTGCCTCCCTCCTCGACGTCTTCGTCTTAACCAGGCGCATC
TCATCCCCCAAGACGTTCCTGTGGTTCCTTTTGCTCCTGCTGCTTCTGACCGGCCTGACC
TACGGAGCGTGGTATTTCTACCCCTATGGACTGCAGATGTTCCACCCTGCCGTGGTTTCC
TGGTGGGCCTCGAAGGGCAGCGGCGGGCAGCATGAGGTGTGGGCGTCCAGAGACTCGTCC
CCACATTTCCAGGCTGAGCAGCGCATTCTGTCCCGGGTACACTCTCTGGAGCGGCGCCTG
GAAGCTCTTGCTGCCGAGTTTTCCTCCAACTGGCAGAAGGAGGCCCTGCGGCTGGAACGT
TTGGAGCTGCGGCAAGGAGCTGGGGGGCAGGGAGGTAGCGGTGGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               141-256, - strand, RNAz p=0.649796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-256, - strand, RNAz p=0.649796

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               141-319, gnl|bosTau2|chr5 (69296748-69296926)
               

               
               141-319, gnl|canFam2|chr10 (29132091-29131853)
               

               
               141-319, gnl|dasNov1|scaffold_17608 (973-737)
               

               
               141-319, gnl|echTel1|scaffold_295815 (2594-2865)
               

               
               141-319, gnl|galGal2|chr1 (47516998-47516795)
               

               
               141-319, gnl|hg17|chr22 (37471709-37471917)
               

               
               141-319, gnl|Hg17|chr22 (37471881-37471724)
               

               
               141-319, gnl|loxAfr1|scaffold_58646 (6143-5891)
               

               
               141-319, gnl|mm7|chr15 (79822947-79823174)
               

               
               141-319, gnl|Mm7|chr15 (79823145-79822961)
               

               
               141-319, gnl|monDom2|scaffold_133 (2352036-2351788)
               

               
               141-319, gnl|panTro1|chr23 (37705418-37705626)
               

               
               141-319, gnl|rheMac2|chr10 (82666123-82666343)
               

               
               141-319, gnl|rn3|chr7 (118009461-118009692)
               


               
               729-884, gnl|bosTau2|chr5 (69303501-69303656)
               

               
               729-884, gnl|Hg17|chr22 (37463064-37462912)
               

               
               729-884, gnl|Mm7|chr15 (79814480-79814328)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-319, gnl|bosTau2|chr5 (69296748-69296926)
               

               
               141-319, gnl|canFam2|chr10 (29132091-29131853)
               

               
               141-319, gnl|dasNov1|scaffold_17608 (973-737)
               

               
               141-319, gnl|echTel1|scaffold_295815 (2594-2865)
               

               
               141-319, gnl|galGal2|chr1 (47516998-47516795)
               

               
               141-319, gnl|hg17|chr22 (37471709-37471917)
               

               
               141-319, gnl|Hg17|chr22 (37471881-37471724)
               

               
               141-319, gnl|loxAfr1|scaffold_58646 (6143-5891)
               

               
               141-319, gnl|mm7|chr15 (79822947-79823174)
               

               
               141-319, gnl|Mm7|chr15 (79823145-79822961)
               

               
               141-319, gnl|monDom2|scaffold_133 (2352036-2351788)
               

               
               141-319, gnl|panTro1|chr23 (37705418-37705626)
               

               
               141-319, gnl|rheMac2|chr10 (82666123-82666343)
               

               
               141-319, gnl|rn3|chr7 (118009461-118009692)
               


               
               729-884, gnl|bosTau2|chr5 (69303501-69303656)
               

               
               729-884, gnl|Hg17|chr22 (37463064-37462912)
               

               
               729-884, gnl|Mm7|chr15 (79814480-79814328)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	141-319, gnl\|bosTau2\|chr5 (69296748-69296926)
	141-319, gnl\|canFam2\|chr10 (29132091-29131853)
	141-319, gnl\|dasNov1\|scaffold_17608 (973-737)
	141-319, gnl\|echTel1\|scaffold_295815 (2594-2865)
	141-319, gnl\|galGal2\|chr1 (47516998-47516795)
	141-319, gnl\|hg17\|chr22 (37471709-37471917)
	141-319, gnl\|Hg17\|chr22 (37471881-37471724)
	141-319, gnl\|loxAfr1\|scaffold_58646 (6143-5891)
	141-319, gnl\|mm7\|chr15 (79822947-79823174)
	141-319, gnl\|Mm7\|chr15 (79823145-79822961)
	141-319, gnl\|monDom2\|scaffold_133 (2352036-2351788)
	141-319, gnl\|panTro1\|chr23 (37705418-37705626)
	141-319, gnl\|rheMac2\|chr10 (82666123-82666343)
	141-319, gnl\|rn3\|chr7 (118009461-118009692)

	729-884, gnl\|bosTau2\|chr5 (69303501-69303656)
	729-884, gnl\|Hg17\|chr22 (37463064-37462912)
	729-884, gnl\|Mm7\|chr15 (79814480-79814328)