Non-Coding RNA Search

Ss1.1-Pig1-132I15.5

Sequence:


               
               GGGGCCAGAGAGGACGTGAGCCGTGGCGGCAGGGCCCGGAGGGGTCCTCTCCCCAAAGCT
CGGGCACAGGGACAGACCTGGAGGGAGCAGCTGCGCAGCCCCCCCGCCCCCCGTGTGCAT
ACAGGAGGGACCCCTGAGGAACCCCAAGTCCCGGGGGGGGGGGGCAGCCTGGGCAGCTTC
TCTGGGTCTCCCTGCCCCGTGGCAGGTCACCCGGGGCTCGCGAGGAGGATCCTGCGCCCC
TCCCGCCCCCAGAAGGCGGGGACCCTCCCTGGGCTCAGCGCACGGCAGCTCTTTGGTCGG
TCCCAGGAGTGCAGGCCGGTCCCTGGGACGGATCTGCCTCGGCAGGGGCCCTGCTATGGC
TTGAGAGATGGTGTGGTCCCTGGGCGGGAGCCTGGCTTACTCTGCGGCTGCGGCCACGTC
CGCGTCCTCCGCGTCCACGTCCGCGTCCGTCTCGGTCTTGATCTGCGCCACCCCCAGGCG
GTAGAGGGTGTCGCGGATGACCACCTCGCCCGGCTGGCAGCCCTGCACCACGTCGTGGAT
CTGCCGGTTGACGATCTCGCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCAGAGAGGACGTGAGCCGTGGCGGCAGGGCCCGGAGGGGTCCTCTCCCCAAAGCT
CGGGCACAGGGACAGACCTGGAGGGAGCAGCTGCGCAGCCCCCCCGCCCCCCGTGTGCAT
ACAGGAGGGACCCCTGAGGAACCCCAAGTCCCGGGGGGGGGGGGCAGCCTGGGCAGCTTC
TCTGGGTCTCCCTGCCCCGTGGCAGGTCACCCGGGGCTCGCGAGGAGGATCCTGCGCCCC
TCCCGCCCCCAGAAGGCGGGGACCCTCCCTGGGCTCAGCGCACGGCAGCTCTTTGGTCGG
TCCCAGGAGTGCAGGCCGGTCCCTGGGACGGATCTGCCTCGGCAGGGGCCCTGCTATGGC
TTGAGAGATGGTGTGGTCCCTGGGCGGGAGCCTGGCTTACTCTGCGGCTGCGGCCACGTC
CGCGTCCTCCGCGTCCACGTCCGCGTCCGTCTCGGTCTTGATCTGCGCCACCCCCAGGCG
GTAGAGGGTGTCGCGGATGACCACCTCGCCCGGCTGGCAGCCCTGCACCACGTCGTGGAT
CTGCCGGTTGACGATCTCGCGGCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               265-564, gnl|bosTau2|chr7 (41893475-41893183)
               

               
               265-564, gnl|Hg17|chr5 (149412108-149411787)
               

               
               265-564, gnl|Mm7|chr18 (61521422-61521740)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-564, gnl|bosTau2|chr7 (41893475-41893183)
               

               
               265-564, gnl|Hg17|chr5 (149412108-149411787)
               

               
               265-564, gnl|Mm7|chr18 (61521422-61521740)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	265-564, gnl\|bosTau2\|chr7 (41893475-41893183)
	265-564, gnl\|Hg17\|chr5 (149412108-149411787)
	265-564, gnl\|Mm7\|chr18 (61521422-61521740)