Non-Coding RNA Search

Ss1.1-Pig1-132I19.5

Sequence:


               
               TTGGGCAGCAGAGCTGGTTCCTGCCATTCTAAGACCTGAAAAGACTGCGCGTCTTTCACC
TTTCTGCCCGGCTTCTTCTGCCCATCGAGGCTCTTACTTTTCGGAGGCCTGGGCGGGGGG
GTTTGACTCTCAAAGGCTGATAACTTCCGCAAGCGATAGTAGAAGGCTTCCGTCAGCTCC
TCCACTGTGGCGACGGGGAGGGGCCTCGCCGGCTGGCTTGGCCGCCCCTTGGCCTCCACT
ACCGTCAGGTCCAGCCACCGGGGAGAGATCTCGAAGCACATCTCAGGGTTGGAGTCCAGG
CTGACCACAAAGAAGGGTTCCATGATCTTCTCCTCCAGCCGCAGGCCCGGGAAGGAGGGC
AGAGGGTCCACAGGGAGGCTAGTGTCCTTGGCTACGACCTTGACCTCACAGGGCAGCGAG
AACTGGGCGGTCAGGTCCTGCAGGCTGTAGCGCCGGCCATCCCTCAACTCCTCCACGAAG
CTGCCGGGGAAGTAGAGGGGCAGCAGAATCTGCTCTTGGTCCTCCGACTCGCCATCCTCT
TCTTCTTCCTCCCCCGTCTGGTCACTCAGCCGCTGACACACCAAGACTTCTATGTCCCTC
TCTTGAGCCCCAAGGGCCTGGCCAGTCCCCAACACCTCCAGCCTGTCCCCCATAGCCAGG
GACGTGAAGCCGGGGGTCTCTAACCCGTCAACCTCACAGTCCTTCGTGACTGCCACCCGG
AGTGGCCGGCCTGGCTGGAGAGCACCCAGGAGGTCGAAGGTGGTGGGGAACTCTCTTGGC
CGCCGCCGCAGCTTGCCCTGGTAGGCTCCGGAGATCATGAAGTGTCTGGGCACCTTCCGG
CCCTTCGTTGAGGCCAGGAACCGCCAGGGTGGCGAAGCCAGGCCTTGGATGCAGAGCTTC
TGGCCCTTCTGCAAGCAGCCCACCCACGGGCTGAGGAAGGGGCATGGCCCCTCCGGAACT
TCCAGGATCTCCGTGGACAGGGGGGCGGGGTCCAGGGCGCGCACGTAGTCCTGCAGCGAC
ACAGGTTCCATGGTCCGCGCAGCTCGCGGGACCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGCAGCAGAGCTGGTTCCTGCCATTCTAAGACCTGAAAAGACTGCGCGTCTTTCACC
TTTCTGCCCGGCTTCTTCTGCCCATCGAGGCTCTTACTTTTCGGAGGCCTGGGCGGGGGG
GTTTGACTCTCAAAGGCTGATAACTTCCGCAAGCGATAGTAGAAGGCTTCCGTCAGCTCC
TCCACTGTGGCGACGGGGAGGGGCCTCGCCGGCTGGCTTGGCCGCCCCTTGGCCTCCACT
ACCGTCAGGTCCAGCCACCGGGGAGAGATCTCGAAGCACATCTCAGGGTTGGAGTCCAGG
CTGACCACAAAGAAGGGTTCCATGATCTTCTCCTCCAGCCGCAGGCCCGGGAAGGAGGGC
AGAGGGTCCACAGGGAGGCTAGTGTCCTTGGCTACGACCTTGACCTCACAGGGCAGCGAG
AACTGGGCGGTCAGGTCCTGCAGGCTGTAGCGCCGGCCATCCCTCAACTCCTCCACGAAG
CTGCCGGGGAAGTAGAGGGGCAGCAGAATCTGCTCTTGGTCCTCCGACTCGCCATCCTCT
TCTTCTTCCTCCCCCGTCTGGTCACTCAGCCGCTGACACACCAAGACTTCTATGTCCCTC
TCTTGAGCCCCAAGGGCCTGGCCAGTCCCCAACACCTCCAGCCTGTCCCCCATAGCCAGG
GACGTGAAGCCGGGGGTCTCTAACCCGTCAACCTCACAGTCCTTCGTGACTGCCACCCGG
AGTGGCCGGCCTGGCTGGAGAGCACCCAGGAGGTCGAAGGTGGTGGGGAACTCTCTTGGC
CGCCGCCGCAGCTTGCCCTGGTAGGCTCCGGAGATCATGAAGTGTCTGGGCACCTTCCGG
CCCTTCGTTGAGGCCAGGAACCGCCAGGGTGGCGAAGCCAGGCCTTGGATGCAGAGCTTC
TGGCCCTTCTGCAAGCAGCCCACCCACGGGCTGAGGAAGGGGCATGGCCCCTCCGGAACT
TCCAGGATCTCCGTGGACAGGGGGGCGGGGTCCAGGGCGCGCACGTAGTCCTGCAGCGAC
ACAGGTTCCATGGTCCGCGCAGCTCGCGGGACCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55586605|ref|XP_513250.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55586605|ref|XP_513250.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               486-593, - strand, RNAz p=0.636636
               

               
               754-913, + strand, RNAz p=0.639242

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-593, - strand, RNAz p=0.636636
               

               
               754-913, + strand, RNAz p=0.639242

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-990, gnl|bosTau2|chr2 (76068739-76067799)
               

               
               53-990, gnl|Hg17|chr1 (27893688-27892748)
               

               
               53-990, gnl|Mm7|chr4 (132163624-132164579)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-990, gnl|bosTau2|chr2 (76068739-76067799)
               

               
               53-990, gnl|Hg17|chr1 (27893688-27892748)
               

               
               53-990, gnl|Mm7|chr4 (132163624-132164579)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               cly (0.120642)

	486-593, - strand, RNAz p=0.636636
	754-913, + strand, RNAz p=0.639242

	53-990, gnl\|bosTau2\|chr2 (76068739-76067799)
	53-990, gnl\|Hg17\|chr1 (27893688-27892748)
	53-990, gnl\|Mm7\|chr4 (132163624-132164579)