Non-Coding RNA Search

Ss1.1-Pig1-132I23.5

Sequence:


               
               CCGGGACACCACATGCATGGTGTGGCGGCTGCTGCAGCAGGGTGGTCTCTCAGTGGGGCT
GGCATCGAAGCCCGTGCAGGTCCTATATGGGCATGAGGCTGCAGTGAGCTGTGTGGCCAT
CAGCACTGAACTCGACATGGCAGTGTCTGGATCTGAGGTGTGTGTATGCTTGTGCTCAGG
GGAGACTGAGTTTGCTGGGCACTGCCCTTGGAGCCCAGACACTCCTGCCTAGCACCCTAA
GCTGCCTTCCCGCAGGATGGAACTGTGATCATCCACACTGTACGCCGCGGCCACTTTGTG
GCCACACTGAGGCCCCCAGGAGCTACGTTGCCTGGACCCGTGGCTCACCTGGCACTGGGG
TCTGAGGGCCAGATTGTGGTGCAGAGCTCAGCGCGGGAGCGTCTGGGGGCTCAGGTATGG
GGAAGGGGCACCCAGCCAAGATAGGAGTAGTTGGGATTCTGTTCTTGCTAACACCTCCTT
CCTCCAGGTCACCTACTCCTTGCACCTCTACTCTGTGAATGGGAGGTTGCGAGCTTCACT
CTGCACATTCTCCACCTGAACAAACTGCTGCCGGCCGTGCCTCCCCTGCCCATGAAGGTG
CCCATCCGCAGTGTGGCTGTGACCAAGGAACGCAGCCATGTGCTCGTGGGCCTGGAGGAC
GGCAAGCTTATCGTGGTGGGCGCAGGGCAGCCCTCTGAGGTGCGTAGCAGCCAGTTCGCG
CGGAAGTTGTGGCGTTCCTCCAGGCGCATCTCCCAGGTGTCCTCCGGGGAGACCGAGTAC
AACCCTGGAGAGGCCCGTTGACAGCCTGACCTGCCCCACTGCTCAGCCCCGCCCCTAGTG
GGCTGCGCTCCCGAAGACTCCGTCCCGGAGGGGGAAACTGAGGAGGAGGCGAATCCCAGT
CCGCACTCGGGGTGGGCAGGGCCCCACCTCCGCCCAGCTCAGGGATTGGCAGGCGGTGTA
CTCCAGGAAGCCACGCCCCTCGCTGGCAGAGGGGCTGCCTGGAGTCCCAGTACTGGCCAG
AGCGGCCGCACAGCACTTTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGACACCACATGCATGGTGTGGCGGCTGCTGCAGCAGGGTGGTCTCTCAGTGGGGCT
GGCATCGAAGCCCGTGCAGGTCCTATATGGGCATGAGGCTGCAGTGAGCTGTGTGGCCAT
CAGCACTGAACTCGACATGGCAGTGTCTGGATCTGAGGTGTGTGTATGCTTGTGCTCAGG
GGAGACTGAGTTTGCTGGGCACTGCCCTTGGAGCCCAGACACTCCTGCCTAGCACCCTAA
GCTGCCTTCCCGCAGGATGGAACTGTGATCATCCACACTGTACGCCGCGGCCACTTTGTG
GCCACACTGAGGCCCCCAGGAGCTACGTTGCCTGGACCCGTGGCTCACCTGGCACTGGGG
TCTGAGGGCCAGATTGTGGTGCAGAGCTCAGCGCGGGAGCGTCTGGGGGCTCAGGTATGG
GGAAGGGGCACCCAGCCAAGATAGGAGTAGTTGGGATTCTGTTCTTGCTAACACCTCCTT
CCTCCAGGTCACCTACTCCTTGCACCTCTACTCTGTGAATGGGAGGTTGCGAGCTTCACT
CTGCACATTCTCCACCTGAACAAACTGCTGCCGGCCGTGCCTCCCCTGCCCATGAAGGTG
CCCATCCGCAGTGTGGCTGTGACCAAGGAACGCAGCCATGTGCTCGTGGGCCTGGAGGAC
GGCAAGCTTATCGTGGTGGGCGCAGGGCAGCCCTCTGAGGTGCGTAGCAGCCAGTTCGCG
CGGAAGTTGTGGCGTTCCTCCAGGCGCATCTCCCAGGTGTCCTCCGGGGAGACCGAGTAC
AACCCTGGAGAGGCCCGTTGACAGCCTGACCTGCCCCACTGCTCAGCCCCGCCCCTAGTG
GGCTGCGCTCCCGAAGACTCCGTCCCGGAGGGGGAAACTGAGGAGGAGGCGAATCCCAGT
CCGCACTCGGGGTGGGCAGGGCCCCACCTCCGCCCAGCTCAGGGATTGGCAGGCGGTGTA
CTCCAGGAAGCCACGCCCCTCGCTGGCAGAGGGGCTGCCTGGAGTCCCAGTACTGGCCAG
AGCGGCCGCACAGCACTTTTTGCA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               38-540, gnl|bosTau2|chr22 (41068532-41069034)
               

               
               38-540, gnl|Hg17|chr3 (47024561-47025066)
               

               
               38-540, gnl|Mm7|chr9 (110324038-110323532)
               


               
               821-1044, gnl|bosTau2|chr22 (41070133-41070359)
               

               
               821-1044, gnl|Hg17|chr3 (47025752-47026066)
               

               
               821-1044, gnl|Mm7|chr9 (110323003-110322630)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-540, gnl|bosTau2|chr22 (41068532-41069034)
               

               
               38-540, gnl|Hg17|chr3 (47024561-47025066)
               

               
               38-540, gnl|Mm7|chr9 (110324038-110323532)
               


               
               821-1044, gnl|bosTau2|chr22 (41070133-41070359)
               

               
               821-1044, gnl|Hg17|chr3 (47025752-47026066)
               

               
               821-1044, gnl|Mm7|chr9 (110323003-110322630)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	38-540, gnl\|bosTau2\|chr22 (41068532-41069034)
	38-540, gnl\|Hg17\|chr3 (47024561-47025066)
	38-540, gnl\|Mm7\|chr9 (110324038-110323532)

	821-1044, gnl\|bosTau2\|chr22 (41070133-41070359)
	821-1044, gnl\|Hg17\|chr3 (47025752-47026066)
	821-1044, gnl\|Mm7\|chr9 (110323003-110322630)

	nco (0.161734)
	cag (0.151194)
	pla (0.133672)
	ese (0.126502)
	cly (0.120642)