Ss1.1-Pig1-132J11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCACCTGGCCCGGCTCAGTGAGATCTTTGCCGCTCGGGGTGATTACCTCCAGACGCT AAAGTTCATACAGCAGATGGCGGGCAGTATCCTTGTCCAGATGGCAGGGGTGCCCGCGTG GAGGGAGGTCACCATGCAGCTGACCGAACTGGCTGACCAGACTGGCTACGTGGAGTACTA CAGGTGGCTCTCCTACCTCCTGCTCTTCGTCCTGGACCTGGTCATCTGCCTCCTCACCTG CCTGGGACTGGCCAAGCGCTCCAGGTGCCTCCTGGCCTCGATGCTGTGCTGCGGGATGCT GGCCCTGCTCCTAAGCTGGACGTCCCTGGCCGCCGACGCGGCTGCAGCAGTGGGCACCAG TGACTTCTGCGTGGCTCCTGACACCTTTATCCTGAATATCACGGAGGACGAAGTCCCCGC AGAGGTGACCCGTTACTACCTGTACTGCAGTCAGAGCGGAAGCAGCCCCTTCCAGCAGGC ACTGACGGTCTTCCAGCGCTCGCTGACCAGCATGCAGATCCAGGTTGCAGGCCTGCTGCA GTTTGCAGTGCCCCTCTTCCCCACGGCAGAGAAAGATCTGCTTGGAATCCAGCTCCTGTT GAACTCATCTGAGTCCAGCCTCCACCAGCTGACTGCCATGTTGGATTGCCGGGGGCTGCA CAAGGACTACCTGGACGCCCTCGCTGGCATCTGCTATGATGGCCTCGAGGGCCTGCTCTT CCTCGGCCTCTTCTCCCTCCTGGCCGCCCTGGCCTTCTCCACCATGATCTGCATAGCACC GCGGGCCTGGAAGCACTTTGCCACCAGGGACAGAGACTACGACGACATTGACGACGACGA CCCCTTCAACCCCCAGGCCCGGCGCATCGCTGCCCACAACCCCTCCCGGGGGCAGCTGCG CAGCTTCTGCAGCTACAGCAGCGGCCTGGGCAGCCAGACCAGCCTGCAGCCCCCGGCCCA GACCATCTCCAACGCCCCCGTCTCGGAGTACATGAACCAAGCCGTGCTCTTTGGTGGGAA TCCACGCTACGAGAACGTGCCGCTTATCGGAAGAGGCTCCCCTCCGCCCACGTACTCTCC CAGCATGAGGGCCACCTACCTGTCGGTGGCAGATGGACAGCTGAGACACTATGGGAGCGA GTTTCCAGCCTAACACTTCCAGGAGTTCCTGCCTCCTTGATCCGTTCTGGTTTTTAACTC ATGCACATGTTAAAAAGCTGCGTTTCTTTAATAGAAACCAAAGCCACCTGGAGGCTGCAC GCCTGCAGGATTACAAGGCTTCTGCTGGCGCACAAGAGCAGCTGAGATTCAGGGAGAATC GGCCCGGGGTTGGCTGATTCCCAGGCATTCAGAAGACCCATGACTTGGACTTTGGACTTG GACTTGGCCTCCTGTTCACACCAGAAATGCCCCCCCGCCCCTGCCCCCGGTGCTTGGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCACCTGGCCCGGCTCAGTGAGATCTTTGCCGCTCGGGGTGATTACCTCCAGACGCT AAAGTTCATACAGCAGATGGCGGGCAGTATCCTTGTCCAGATGGCAGGGGTGCCCGCGTG GAGGGAGGTCACCATGCAGCTGACCGAACTGGCTGACCAGACTGGCTACGTGGAGTACTA CAGGTGGCTCTCCTACCTCCTGCTCTTCGTCCTGGACCTGGTCATCTGCCTCCTCACCTG CCTGGGACTGGCCAAGCGCTCCAGGTGCCTCCTGGCCTCGATGCTGTGCTGCGGGATGCT GGCCCTGCTCCTAAGCTGGACGTCCCTGGCCGCCGACGCGGCTGCAGCAGTGGGCACCAG TGACTTCTGCGTGGCTCCTGACACCTTTATCCTGAATATCACGGAGGACGAAGTCCCCGC AGAGGTGACCCGTTACTACCTGTACTGCAGTCAGAGCGGAAGCAGCCCCTTCCAGCAGGC ACTGACGGTCTTCCAGCGCTCGCTGACCAGCATGCAGATCCAGGTTGCAGGCCTGCTGCA GTTTGCAGTGCCCCTCTTCCCCACGGCAGAGAAAGATCTGCTTGGAATCCAGCTCCTGTT GAACTCATCTGAGTCCAGCCTCCACCAGCTGACTGCCATGTTGGATTGCCGGGGGCTGCA CAAGGACTACCTGGACGCCCTCGCTGGCATCTGCTATGATGGCCTCGAGGGCCTGCTCTT CCTCGGCCTCTTCTCCCTCCTGGCCGCCCTGGCCTTCTCCACCATGATCTGCATAGCACC GCGGGCCTGGAAGCACTTTGCCACCAGGGACAGAGACTACGACGACATTGACGACGACGA CCCCTTCAACCCCCAGGCCCGGCGCATCGCTGCCCACAACCCCTCCCGGGGGCAGCTGCG CAGCTTCTGCAGCTACAGCAGCGGCCTGGGCAGCCAGACCAGCCTGCAGCCCCCGGCCCA GACCATCTCCAACGCCCCCGTCTCGGAGTACATGAACCAAGCCGTGCTCTTTGGTGGGAA TCCACGCTACGAGAACGTGCCGCTTATCGGAAGAGGCTCCCCTCCGCCCACGTACTCTCC CAGCATGAGGGCCACCTACCTGTCGGTGGCAGATGGACAGCTGAGACACTATGGGAGCGA GTTTCCAGCCTAACACTTCCAGGAGTTCCTGCCTCCTTGATCCGTTCTGGTTTTTAACTC ATGCACATGTTAAAAAGCTGCGTTTCTTTAATAGAAACCAAAGCCACCTGGAGGCTGCAC GCCTGCAGGATTACAAGGCTTCTGCTGGCGCACAAGAGCAGCTGAGATTCAGGGAGAATC GGCCCGGGGTTGGCTGATTCCCAGGCATTCAGAAGACCCATGACTTGGACTTTGGACTTG GACTTGGCCTCCTGTTCACACCAGAAATGCCCCCCCGCCCCTGCCCCCGGTGCTTGGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 541-1369, - strand, RNAz p=0.794726 | |
| 845-997, - strand, RNAz p=0.732499 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 541-1369, - strand, RNAz p=0.794726 | |
| 845-997, - strand, RNAz p=0.732499 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-185, gnl|bosTau2|chr19 (52882099-52881915) | |
| 1-185, gnl|canFam2|chr9 (9138600-9138316) | |
| 1-185, gnl|danRer3|chrNA (137205846-137206109) | |
| 1-185, gnl|dasNov1|scaffold_52462 (10015-10271) | |
| 1-185, gnl|fr1|chrUn (170055788-170056045) | |
| 1-185, gnl|hg17|chr17 (69744991-69745256) | |
| 1-185, gnl|Hg17|chr17 (69745066-69745250) | |
| 1-185, gnl|mm7|chr11 (114805616-114805859) | |
| 1-185, gnl|Mm7|chr11 (114805672-114805856) | |
| 1-185, gnl|monDom2|scaffold_18 (31272782-31273043) | |
| 1-185, gnl|oryCun1|scaffold_142517 (4406-4151) | |
| 1-185, gnl|panTro1|chr19 (73083052-73083317) | |
| 1-185, gnl|rheMac2|chr16 (69513227-69513492) | |
| 1-185, gnl|rn3|chr10 (104588089-104588335) | |
| 1-185, gnl|tetNig1|chr2 (165665-165429) | |
| 1-185, gnl|xenTro1|scaffold_125 (212538-212288) | |
| 541-689, gnl|bosTau2|chr19 (52872053-52871909) | |
| 541-689, gnl|Hg17|chr17 (69757976-69758113) | |
| 541-689, gnl|Mm7|chr11 (114817792-114817922) | |
| 806-997, gnl|bosTau2|chr19 (52869629-52869441) | |
| 806-997, gnl|Hg17|chr17 (69760813-69761004) | |
| 806-997, gnl|Mm7|chr11 (114819854-114820045) | |
| 1057-1414, gnl|bosTau2|chr19 (52865767-52865413) | |
| 1057-1414, gnl|Hg17|chr17 (69767844-69768170) | |
| 1057-1414, gnl|Mm7|chr11 (114828155-114828459) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-185, gnl|bosTau2|chr19 (52882099-52881915) | |
| 1-185, gnl|canFam2|chr9 (9138600-9138316) | |
| 1-185, gnl|danRer3|chrNA (137205846-137206109) | |
| 1-185, gnl|dasNov1|scaffold_52462 (10015-10271) | |
| 1-185, gnl|fr1|chrUn (170055788-170056045) | |
| 1-185, gnl|hg17|chr17 (69744991-69745256) | |
| 1-185, gnl|Hg17|chr17 (69745066-69745250) | |
| 1-185, gnl|mm7|chr11 (114805616-114805859) | |
| 1-185, gnl|Mm7|chr11 (114805672-114805856) | |
| 1-185, gnl|monDom2|scaffold_18 (31272782-31273043) | |
| 1-185, gnl|oryCun1|scaffold_142517 (4406-4151) | |
| 1-185, gnl|panTro1|chr19 (73083052-73083317) | |
| 1-185, gnl|rheMac2|chr16 (69513227-69513492) | |
| 1-185, gnl|rn3|chr10 (104588089-104588335) | |
| 1-185, gnl|tetNig1|chr2 (165665-165429) | |
| 1-185, gnl|xenTro1|scaffold_125 (212538-212288) | |
| 541-689, gnl|bosTau2|chr19 (52872053-52871909) | |
| 541-689, gnl|Hg17|chr17 (69757976-69758113) | |
| 541-689, gnl|Mm7|chr11 (114817792-114817922) | |
| 806-997, gnl|bosTau2|chr19 (52869629-52869441) | |
| 806-997, gnl|Hg17|chr17 (69760813-69761004) | |
| 806-997, gnl|Mm7|chr11 (114819854-114820045) | |
| 1057-1414, gnl|bosTau2|chr19 (52865767-52865413) | |
| 1057-1414, gnl|Hg17|chr17 (69767844-69768170) | |
| 1057-1414, gnl|Mm7|chr11 (114828155-114828459) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |