Non-Coding RNA Search

Ss1.1-Pig1-132L21.5

Sequence:


               
               ATATATATATATATATTATAAATATCAAAGAAATTATATATCTATCCTGGGATGGGAAAA
TGAGGGAGGGCTATGTATAAGGAGAGGGATCTTACTCTTCCTATTCCTCAAACCAGCAGG
AAAAGAGCGGAGACATCAATTGAAGTCTTCCTTTTCCCCATGGTTCCCTCTCTTTTGTCC
CAATTACCATCTAAGGAAAATAGCACCCCCTGTTGTTGGTGCTAAGTGATCAGGAAAGAA
ACCCAGGGAGAGGCGAGTCTGGGTGGGGTCATGGTCAGCGGAGGGAAGGACTTGGAAAAG
TGAGTTAGTGTTCTAGGCTCATTGGCACTTAGTTTCCCCAGGAAAGGGGTCACAGCCCCA
TGACTGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGGGGAGATCAGGAAAAGAG
CTTGGCTGAGCTCCAGAAACAATATTGGATAATCACCCCTTCTTGGGGGAGGGGAATCAG
GGTGGGCTTCTTCAACTGGCCCCTCAAAGTCCCCCCCCATCCCCCCGCCAACCAACACGG
TTGACATCATTTTTAAAACCCAGGCTGGGAGATAATCCAAAAAGCAATATTTCTCATCAT
ATGCCAAAAACTGGGGATAAGAGAGAAGGAGTGGCAGGCCTAGGCCCCTCCGATTGTCCC
TTGGGGGTTACCCCTCAGCCCACCTCAGTATGGTGCTGGGTAGAGGGGATACCTGGGTTC
TAACCTCTAAATAGGGGAGACCCCAGCCTCTGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATATATATATATTATAAATATCAAAGAAATTATATATCTATCCTGGGATGGGAAAA
TGAGGGAGGGCTATGTATAAGGAGAGGGATCTTACTCTTCCTATTCCTCAAACCAGCAGG
AAAAGAGCGGAGACATCAATTGAAGTCTTCCTTTTCCCCATGGTTCCCTCTCTTTTGTCC
CAATTACCATCTAAGGAAAATAGCACCCCCTGTTGTTGGTGCTAAGTGATCAGGAAAGAA
ACCCAGGGAGAGGCGAGTCTGGGTGGGGTCATGGTCAGCGGAGGGAAGGACTTGGAAAAG
TGAGTTAGTGTTCTAGGCTCATTGGCACTTAGTTTCCCCAGGAAAGGGGTCACAGCCCCA
TGACTGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGGGGAGATCAGGAAAAGAG
CTTGGCTGAGCTCCAGAAACAATATTGGATAATCACCCCTTCTTGGGGGAGGGGAATCAG
GGTGGGCTTCTTCAACTGGCCCCTCAAAGTCCCCCCCCATCCCCCCGCCAACCAACACGG
TTGACATCATTTTTAAAACCCAGGCTGGGAGATAATCCAAAAAGCAATATTTCTCATCAT
ATGCCAAAAACTGGGGATAAGAGAGAAGGAGTGGCAGGCCTAGGCCCCTCCGATTGTCCC
TTGGGGGTTACCCCTCAGCCCACCTCAGTATGGTGCTGGGTAGAGGGGATACCTGGGTTC
TAACCTCTAAATAGGGGAGACCCCAGCCTCTGGACA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-217, + strand, RNAz p=0.999952
               

               
               429-583, - strand, RNAz p=0.97043
               

               
               624-756, + strand, RNAz p=0.993439

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-217, + strand, RNAz p=0.999952
               

               
               429-583, - strand, RNAz p=0.97043
               

               
               624-756, + strand, RNAz p=0.993439

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               133-187, + strand, RNAmicro p=0.935172

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               133-187, + strand, RNAmicro p=0.935172

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               40-134, AL559288 Homo sapiens T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED 
(emb|AL559288.3|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, BX456374 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP001YF03 
(emb|BX456374.2|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, UI-CF-DU1-aay-p-16-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone 
(gb|BM984485.1|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, 17000597719572 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN255464.1|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, 17000470665740 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN255466.1|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, HESC4_37_A02.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX869748.1|), blast E-value=6e-26, identity=91.58%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-134, AL559288 Homo sapiens T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED 
(emb|AL559288.3|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, BX456374 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP001YF03 
(emb|BX456374.2|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, UI-CF-DU1-aay-p-16-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone 
(gb|BM984485.1|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, 17000597719572 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN255464.1|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, 17000470665740 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN255466.1|), blast E-value=6e-26, identity=91.58% 
               

               
               40-134, HESC4_37_A02.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX869748.1|), blast E-value=6e-26, identity=91.58%

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_015457, +
               

               
               3' of NM_015457, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015457, +
               

               
               3' of NM_015457, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-284, gnl|bosTau2|chr15 (50458128-50457866)
               

               
               1-284, gnl|Hg17|chr11 (57224465-57224750)
               

               
               1-284, gnl|Mm7|chr2 (84532616-84532285)
               


               
               389-756, gnl|bosTau2|chr15 (50457844-50457489)
               

               
               389-756, gnl|Hg17|chr11 (57224814-57225159)
               

               
               389-756, gnl|Mm7|chr2 (84532268-84531928)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr15 (50458128-50457866)
               

               
               1-284, gnl|Hg17|chr11 (57224465-57224750)
               

               
               1-284, gnl|Mm7|chr2 (84532616-84532285)
               


               
               389-756, gnl|bosTau2|chr15 (50457844-50457489)
               

               
               389-756, gnl|Hg17|chr11 (57224814-57225159)
               

               
               389-756, gnl|Mm7|chr2 (84532268-84531928)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               med (0.232504)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	40-217, + strand, RNAz p=0.999952
	429-583, - strand, RNAz p=0.97043
	624-756, + strand, RNAz p=0.993439

	40-134, AL559288 Homo sapiens T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED (emb\|AL559288.3\|), blast E-value=6e-26, identity=91.58%
	40-134, BX456374 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP001YF03 (emb\|BX456374.2\|), blast E-value=6e-26, identity=91.58%
	40-134, UI-CF-DU1-aay-p-16-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone (gb\|BM984485.1\|), blast E-value=6e-26, identity=91.58%
	40-134, 17000597719572 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN255464.1\|), blast E-value=6e-26, identity=91.58%
	40-134, 17000470665740 GRN_ES Homo sapiens cDNA 5', mRNA sequence (gb\|CN255466.1\|), blast E-value=6e-26, identity=91.58%
	40-134, HESC4_37_A02.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone (gb\|CX869748.1\|), blast E-value=6e-26, identity=91.58%

	1-284, gnl\|bosTau2\|chr15 (50458128-50457866)
	1-284, gnl\|Hg17\|chr11 (57224465-57224750)
	1-284, gnl\|Mm7\|chr2 (84532616-84532285)

	389-756, gnl\|bosTau2\|chr15 (50457844-50457489)
	389-756, gnl\|Hg17\|chr11 (57224814-57225159)
	389-756, gnl\|Mm7\|chr2 (84532268-84531928)

	med (0.232504)
	nep (0.183925)
	nje (0.16592)
	hyp (0.142837)
	ecc (0.115035)