Ss1.1-Pig1-132L23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCATGGAGTCGGTGGCCCTGTACAGCTTCCAGGCCACGGAGAGCGACGAGCTGGCCT TCAACAAGGGGGACACACTCAAGATCCTGAACATGGAAGATGACCACAACTGGTACAAGG CAGAGCTCCGGGGCGCAGAGGGCTTCGTGCCCAAGAACTACATCCGTGTCAAGCCCCACC CGTGGTACTCGGGCAGAATCTCCCGACAGCTGGCGGAAGAGATTCTGATGAAGCGGAACC ACCCGGGAGCCTTCCTGGTCCGGGAGAGCGAGAGTTCCCCAGGGGAGTTTTCCGTCTCGG TGAACTACGGGGACCAGGTACAACACTTCAAGGTGCTGCGTGAGGTCCCAGGGAAGTACC ACCTGTGGGAGGAGAAGTTCGACTCTCTGAACGAGCTCGTCGCCTTCTACCGAACAACCA CCATCGCCAAGAAGCGGCAGGTGTTCCTGCGGGATGAGGAGTCCGTGGTCAAGCCGCCTC GGGCCTGCTATGCCCAGGCCCAGTTCGACTTCTCCACCCAGGACCCCTCCCAGCTCAGCT TCCGCCGCGGTGACATCATCGAGGTCCTGGAGCGCCTGGACCCCTGCTGGTGGCGGGGCC GGCTCTGTGGGCGCGTCGGCTTCTTCCCTCGGAGCTACGTCCAGCCGGTGCACCTGTGAC CAGAGAGGGCCCGGGGCGGGGCCGGCAGACGTATGTGCACCGGGCGCTGAGGGCCAGAAA GAGGACACGGGCGCCCCCAGCCCAGGGCCTCAGACTGCGCAGCCGGCCTCCTGCGCTCCA TGCAGACTGGGATGGGCCCACGCTGCGTCCCGGGCCCCCCGGACTTGGGGAGCCCCGGGC CCGGCCATCCTCTTCCCACTGGCCGCCCGCTGTGACGTCACAGGGTGGCCGGCAGGGCCC GTCCACCCGGAACACCAGTGGCCCCTCCCAGGGAGGGACCCCTAGGTCCCACCCACCTGG GGCTCGAGCCGAGGACCCACGGCTGGGGGGGTGACTTCGCCTTGGGGCCCGCCTGCCCCT CCATCCAAAAGCCCCAAAGGCTGGCTGCTGGGGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCATGGAGTCGGTGGCCCTGTACAGCTTCCAGGCCACGGAGAGCGACGAGCTGGCCT TCAACAAGGGGGACACACTCAAGATCCTGAACATGGAAGATGACCACAACTGGTACAAGG CAGAGCTCCGGGGCGCAGAGGGCTTCGTGCCCAAGAACTACATCCGTGTCAAGCCCCACC CGTGGTACTCGGGCAGAATCTCCCGACAGCTGGCGGAAGAGATTCTGATGAAGCGGAACC ACCCGGGAGCCTTCCTGGTCCGGGAGAGCGAGAGTTCCCCAGGGGAGTTTTCCGTCTCGG TGAACTACGGGGACCAGGTACAACACTTCAAGGTGCTGCGTGAGGTCCCAGGGAAGTACC ACCTGTGGGAGGAGAAGTTCGACTCTCTGAACGAGCTCGTCGCCTTCTACCGAACAACCA CCATCGCCAAGAAGCGGCAGGTGTTCCTGCGGGATGAGGAGTCCGTGGTCAAGCCGCCTC GGGCCTGCTATGCCCAGGCCCAGTTCGACTTCTCCACCCAGGACCCCTCCCAGCTCAGCT TCCGCCGCGGTGACATCATCGAGGTCCTGGAGCGCCTGGACCCCTGCTGGTGGCGGGGCC GGCTCTGTGGGCGCGTCGGCTTCTTCCCTCGGAGCTACGTCCAGCCGGTGCACCTGTGAC CAGAGAGGGCCCGGGGCGGGGCCGGCAGACGTATGTGCACCGGGCGCTGAGGGCCAGAAA GAGGACACGGGCGCCCCCAGCCCAGGGCCTCAGACTGCGCAGCCGGCCTCCTGCGCTCCA TGCAGACTGGGATGGGCCCACGCTGCGTCCCGGGCCCCCCGGACTTGGGGAGCCCCGGGC CCGGCCATCCTCTTCCCACTGGCCGCCCGCTGTGACGTCACAGGGTGGCCGGCAGGGCCC GTCCACCCGGAACACCAGTGGCCCCTCCCAGGGAGGGACCCCTAGGTCCCACCCACCTGG GGCTCGAGCCGAGGACCCACGGCTGGGGGGGTGACTTCGCCTTGGGGCCCGCCTGCCCCT CCATCCAAAAGCCCCAAAGGCTGGCTGCTGGGGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 472-591, - strand, RNAz p=0.695752 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 472-591, - strand, RNAz p=0.695752 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 182-304, gnl|bosTau2|chr19 (26826757-26826635) | |
| 182-304, gnl|canFam2|chr5 (44026324-44026194) | |
| 182-304, gnl|danRer3|chr3 (20949516-20949646) | |
| 182-304, gnl|dasNov1|scaffold_60402 (9956-10086) | |
| 182-304, gnl|fr1|chrUn (120040028-120040158) | |
| 182-304, gnl|galGal2|chr14 (7219047-7219177) | |
| 182-304, gnl|hg17|chr17 (18879992-18880122) | |
| 182-304, gnl|Hg17|chr17 (18880118-18879996) | |
| 182-304, gnl|mm7|chr11 (61745871-61745741) | |
| 182-304, gnl|Mm7|chr11 (61745743-61745865) | |
| 182-304, gnl|oryCun1|scaffold_180278 (3939-4069) | |
| 182-304, gnl|panTro1|chr19 (19350663-19350533) | |
| 182-304, gnl|rheMac2|chr16 (18670843-18670973) | |
| 182-304, gnl|rn3|chr10 (47836525-47836395) | |
| 182-304, gnl|tetNig1|chrUn_random (39779773-39779900) | |
| 182-304, gnl|xenTro1|scaffold_12 (808888-809018) | |
| 472-987, gnl|bosTau2|chr19 (26817353-26816822) | |
| 472-987, gnl|canFam2|chr5 (44038175-44037671) | |
| 472-987, gnl|echTel1|scaffold_306686 (14686-15141) | |
| 472-987, gnl|Hg17|chr17 (18866184-18865585) | |
| 472-987, gnl|hg17|chr8 (17497617-17498094) | |
| 472-987, gnl|mm7|chr11 (61753703-61753419) | |
| 472-987, gnl|oryCun1|scaffold_147428 (3788-4193) | |
| 472-987, gnl|panTro1|chr7 (18286244-18286721) | |
| 472-987, gnl|rheMac2|chr8 (17483475-17483935) | |
| 472-987, gnl|rn3|chr10 (47844572-47844281) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-304, gnl|bosTau2|chr19 (26826757-26826635) | |
| 182-304, gnl|canFam2|chr5 (44026324-44026194) | |
| 182-304, gnl|danRer3|chr3 (20949516-20949646) | |
| 182-304, gnl|dasNov1|scaffold_60402 (9956-10086) | |
| 182-304, gnl|fr1|chrUn (120040028-120040158) | |
| 182-304, gnl|galGal2|chr14 (7219047-7219177) | |
| 182-304, gnl|hg17|chr17 (18879992-18880122) | |
| 182-304, gnl|Hg17|chr17 (18880118-18879996) | |
| 182-304, gnl|mm7|chr11 (61745871-61745741) | |
| 182-304, gnl|Mm7|chr11 (61745743-61745865) | |
| 182-304, gnl|oryCun1|scaffold_180278 (3939-4069) | |
| 182-304, gnl|panTro1|chr19 (19350663-19350533) | |
| 182-304, gnl|rheMac2|chr16 (18670843-18670973) | |
| 182-304, gnl|rn3|chr10 (47836525-47836395) | |
| 182-304, gnl|tetNig1|chrUn_random (39779773-39779900) | |
| 182-304, gnl|xenTro1|scaffold_12 (808888-809018) | |
| 472-987, gnl|bosTau2|chr19 (26817353-26816822) | |
| 472-987, gnl|canFam2|chr5 (44038175-44037671) | |
| 472-987, gnl|echTel1|scaffold_306686 (14686-15141) | |
| 472-987, gnl|Hg17|chr17 (18866184-18865585) | |
| 472-987, gnl|hg17|chr8 (17497617-17498094) | |
| 472-987, gnl|mm7|chr11 (61753703-61753419) | |
| 472-987, gnl|oryCun1|scaffold_147428 (3788-4193) | |
| 472-987, gnl|panTro1|chr7 (18286244-18286721) | |
| 472-987, gnl|rheMac2|chr8 (17483475-17483935) | |
| 472-987, gnl|rn3|chr10 (47844572-47844281) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) |