Non-Coding RNA Search

Ss1.1-Pig1-132M01.5

Sequence:


               
               GAGGCGCTCTCCGAGTACCGGCCCACCATCTCCGAGACCCACCAGCTTCGGGGCCGCTCC
TCCGTGGCTGACAAGAAGCTGGTCCTCATCCCGCTCATCTTCATCTGCCTCCGGGTCTGG
AGCACCGTGCGCTTCGTCCTGACCCTCTGCGGCTCCCCGGCCGTGCAGGTGCCGGTGTTG
GTCGTTCTGCATGGTGTCGGGAACACGTTTCAGGGAGGCGCCAATTGCATCATGTTCGCC
CTCTGCACCCAGGCGGTCCGGACTCGGCTCCTGCAAGTCTGCTGCTGCTGCTCCTCTCAG
TCTCCCACCACCGAGACCCAGGAGGGCCCTCCCGCCGCCTCCGCACCCATCAAGGCGGGC
AAGTCTCAGGGCCCCAGCTGGGCCCCAGACCAACAACTGAGCACCTGAGCTCCCCGCTCC
CTAGCTCTGTGCGTAGGTGCTGCCACCTGGGGCCAGGTGGCTCAGAGTCCCCTCTGTGGG
GGGGCTGTGCTGTGACTGTTGGCAGTTGGAACTTTTGACCCCCGTGGGGGAGCAGCGCGA
ACTCAGCTTGTCTACCTCCTTGACCCTCAGGCACGACCCCTCACACCCCGCTGCACTGGG
GGGAGTTCGTGTGCATGAGGGCTGGCACTGACATTCAGGGAAACCAGTGGTGTGGGATCA
CGGCCACGCTGCCTTGTGGCCAGCGGATCATCGGCCTCGTTTACAGGTGGAGGGACCCAC
ACCTGTGGGAAAAGCACAAAGAGACATGCTCACTGTATACCCGTCCTCAATAAAATGCCA
AGGGGCTACCAGAGATGCGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGCTCTCCGAGTACCGGCCCACCATCTCCGAGACCCACCAGCTTCGGGGCCGCTCC
TCCGTGGCTGACAAGAAGCTGGTCCTCATCCCGCTCATCTTCATCTGCCTCCGGGTCTGG
AGCACCGTGCGCTTCGTCCTGACCCTCTGCGGCTCCCCGGCCGTGCAGGTGCCGGTGTTG
GTCGTTCTGCATGGTGTCGGGAACACGTTTCAGGGAGGCGCCAATTGCATCATGTTCGCC
CTCTGCACCCAGGCGGTCCGGACTCGGCTCCTGCAAGTCTGCTGCTGCTGCTCCTCTCAG
TCTCCCACCACCGAGACCCAGGAGGGCCCTCCCGCCGCCTCCGCACCCATCAAGGCGGGC
AAGTCTCAGGGCCCCAGCTGGGCCCCAGACCAACAACTGAGCACCTGAGCTCCCCGCTCC
CTAGCTCTGTGCGTAGGTGCTGCCACCTGGGGCCAGGTGGCTCAGAGTCCCCTCTGTGGG
GGGGCTGTGCTGTGACTGTTGGCAGTTGGAACTTTTGACCCCCGTGGGGGAGCAGCGCGA
ACTCAGCTTGTCTACCTCCTTGACCCTCAGGCACGACCCCTCACACCCCGCTGCACTGGG
GGGAGTTCGTGTGCATGAGGGCTGGCACTGACATTCAGGGAAACCAGTGGTGTGGGATCA
CGGCCACGCTGCCTTGTGGCCAGCGGATCATCGGCCTCGTTTACAGGTGGAGGGACCCAC
ACCTGTGGGAAAAGCACAAAGAGACATGCTCACTGTATACCCGTCCTCAATAAAATGCCA
AGGGGCTACCAGAGATGCGGCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-423, - strand, RNAz p=0.779245

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-423, - strand, RNAz p=0.779245

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-191, gnl|bosTau2|chr16 (30586809-30586619)
               

               
               1-191, gnl|canFam2|chr5 (65455122-65455327)
               

               
               1-191, gnl|danRer3|chr23 (31118236-31118046)
               

               
               1-191, gnl|fr1|chrUn (285767294-285767479)
               

               
               1-191, gnl|galGal2|chr21 (3106224-3106409)
               

               
               1-191, gnl|hg17|chr1 (9099789-9099990)
               

               
               1-191, gnl|Hg17|chr1 (9100002-9099812)
               

               
               1-191, gnl|loxAfr1|scaffold_69724 (8022-8222)
               

               
               1-191, gnl|mm7|chr4 (149091334-149091139)
               

               
               1-191, gnl|Mm7|chr4 (149091125-149091318)
               

               
               1-191, gnl|panTro1|chr1 (9104444-9104645)
               

               
               1-191, gnl|rn3|chr5 (167232258-167232063)
               

               
               1-191, gnl|tetNig1|chr9 (2819174-2819358)
               

               
               1-191, gnl|xenTro1|scaffold_464 (972266-972456)
               


               
               328-804, gnl|bosTau2|chr16 (30586066-30585569)
               

               
               328-804, gnl|Hg17|chr1 (9098848-9098324)
               

               
               328-804, gnl|Mm7|chr4 (149091874-149092328)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr16 (30586809-30586619)
               

               
               1-191, gnl|canFam2|chr5 (65455122-65455327)
               

               
               1-191, gnl|danRer3|chr23 (31118236-31118046)
               

               
               1-191, gnl|fr1|chrUn (285767294-285767479)
               

               
               1-191, gnl|galGal2|chr21 (3106224-3106409)
               

               
               1-191, gnl|hg17|chr1 (9099789-9099990)
               

               
               1-191, gnl|Hg17|chr1 (9100002-9099812)
               

               
               1-191, gnl|loxAfr1|scaffold_69724 (8022-8222)
               

               
               1-191, gnl|mm7|chr4 (149091334-149091139)
               

               
               1-191, gnl|Mm7|chr4 (149091125-149091318)
               

               
               1-191, gnl|panTro1|chr1 (9104444-9104645)
               

               
               1-191, gnl|rn3|chr5 (167232258-167232063)
               

               
               1-191, gnl|tetNig1|chr9 (2819174-2819358)
               

               
               1-191, gnl|xenTro1|scaffold_464 (972266-972456)
               


               
               328-804, gnl|bosTau2|chr16 (30586066-30585569)
               

               
               328-804, gnl|Hg17|chr1 (9098848-9098324)
               

               
               328-804, gnl|Mm7|chr4 (149091874-149092328)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nje (0.16592)
               

               
               ute (0.132784)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               ute (0.132784)
               

               
               ldo (0.0970026)

	1-191, gnl\|bosTau2\|chr16 (30586809-30586619)
	1-191, gnl\|canFam2\|chr5 (65455122-65455327)
	1-191, gnl\|danRer3\|chr23 (31118236-31118046)
	1-191, gnl\|fr1\|chrUn (285767294-285767479)
	1-191, gnl\|galGal2\|chr21 (3106224-3106409)
	1-191, gnl\|hg17\|chr1 (9099789-9099990)
	1-191, gnl\|Hg17\|chr1 (9100002-9099812)
	1-191, gnl\|loxAfr1\|scaffold_69724 (8022-8222)
	1-191, gnl\|mm7\|chr4 (149091334-149091139)
	1-191, gnl\|Mm7\|chr4 (149091125-149091318)
	1-191, gnl\|panTro1\|chr1 (9104444-9104645)
	1-191, gnl\|rn3\|chr5 (167232258-167232063)
	1-191, gnl\|tetNig1\|chr9 (2819174-2819358)
	1-191, gnl\|xenTro1\|scaffold_464 (972266-972456)

	328-804, gnl\|bosTau2\|chr16 (30586066-30585569)
	328-804, gnl\|Hg17\|chr1 (9098848-9098324)
	328-804, gnl\|Mm7\|chr4 (149091874-149092328)