Ss1.1-Pig1-132M08.5
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GGGGGCTCCTGGGGAAGGATAGGAGGAAGAGCCCCTGTCCCACTCCCCAAGACCCTTAGG
TCCACGCCAGCCCTGACCCATCACGTGACCCCGACGGCCTGAAAACCTCCGTGTCTGGGC
TCAGGCGGGTGACTCGGGCCCTGAGCTGCTCTGTCTCCTTCCGCAGCGGAGTGAGCCGGA
CGCGCATCCAGGCTGCACAATGAACACACACTACTGAGGGCTCTTCTCGGGCACTGGGCC
GTGCGGGGGCCAGGGGCTCCCCCAATTTCCACCCTGCTGCTGCTCCTGGCCTCGGGAGAA
GAGGGACCCTGGGCCCCGGGGGCTGTCCCTCCCTGGGGCCTCGACTGTCTCAGTCCTTTC
TCAATGTTGCACAGTTTTTAACCCCTCCACCCCCTTTTTTTGTAGTAGGCTGGGTTTTAA
ATTATAAATGTTAACTGCCTCCGGGCGAAAAAGAGTTTTTAATAAACACCTTATTACCTC
CTTCACTGGACTGGCCCAAGGACTTTAATTTTTAAATTGTGCGGAGATTTTTCCACGGAA
ATAGAAATGACCCTTAGCTGGTCCCTCGCCTTTGGCCCTGGGGTCCGTCCCCTGGCCCAG
GCTGGTGCTCAGGAGAATCTGTTGGGTTTTTAAAGCTATTTGAATCAGATCAAACTGTGT
TTGGTTGTGTCTGAACACTATATGCCTTTTCTCTCTTGGGGAATAAATGATAAAACAGTG
AAAAAAAAAAAAAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGGGCTCCTGGGGAAGGATAGGAGGAAGAGCCCCTGTCCCACTCCCCAAGACCCTTAGG
TCCACGCCAGCCCTGACCCATCACGTGACCCCGACGGCCTGAAAACCTCCGTGTCTGGGC
TCAGGCGGGTGACTCGGGCCCTGAGCTGCTCTGTCTCCTTCCGCAGCGGAGTGAGCCGGA
CGCGCATCCAGGCTGCACAATGAACACACACTACTGAGGGCTCTTCTCGGGCACTGGGCC
GTGCGGGGGCCAGGGGCTCCCCCAATTTCCACCCTGCTGCTGCTCCTGGCCTCGGGAGAA
GAGGGACCCTGGGCCCCGGGGGCTGTCCCTCCCTGGGGCCTCGACTGTCTCAGTCCTTTC
TCAATGTTGCACAGTTTTTAACCCCTCCACCCCCTTTTTTTGTAGTAGGCTGGGTTTTAA
ATTATAAATGTTAACTGCCTCCGGGCGAAAAAGAGTTTTTAATAAACACCTTATTACCTC
CTTCACTGGACTGGCCCAAGGACTTTAATTTTTAAATTGTGCGGAGATTTTTCCACGGAA
ATAGAAATGACCCTTAGCTGGTCCCTCGCCTTTGGCCCTGGGGTCCGTCCCCTGGCCCAG
GCTGGTGCTCAGGAGAATCTGTTGGGTTTTTAAAGCTATTTGAATCAGATCAAACTGTGT
TTGGTTGTGTCTGAACACTATATGCCTTTTCTCTCTTGGGGAATAAATGATAAAACAGTG
AAAAAAAAAAAAAAAAAAAAAAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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236-329, + strand, RNAmicro p=0.917983 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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236-329, + strand, RNAmicro p=0.917983 |
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269-377, BP439791 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP439791.1|), blast E-value=4.2039e-45, identity=98.2% |
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269-423, UMC-pd10en3-001-g08 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO986377.1|), blast E-value=0, identity=93.55% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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269-377, BP439791 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP439791.1|), blast E-value=4.2039e-45, identity=98.2% |
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269-423, UMC-pd10en3-001-g08 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO986377.1|), blast E-value=0, identity=93.55% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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col (0.195008) |
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cli (0.152812) |
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col (0.195008) |
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cli (0.152812) |
