Non-Coding RNA Search

Ss1.1-Pig1-135I18.5

Sequence:


               
               GGCGGGTTTGACTGTGAGAGACCCTGCGGTGGACCGTTCGCTACGTTCGGTGTTCGTGGG
GAACATTCCTTATGAGGCTACTGAAGAGCAATTAAAGGACATCTTTTCTGAGGTTGGACC
TGTTGTTAGTTTCAGGTTGGTATATGATAGGNGAGAACAGGAAAACCAAAGGGTTATGGC
TTCTGTGAATACCAAGACCAGGAGACAGCACTTAGTGCCATGCGAAACCTAAATGGGCGT
GAATTCAGTGGGAGAGCACTTCGAGTGGACAATGCTGCCAGCGAAAAGAACAAAGAGGAG
CTGAAGAGTCTTGGCACTGGTGCCCCTGTCATTGAGTCACCTTATGGAGAGACCATCAGT
CCCGAGGATGCCCCTGAATCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAGCAGATG
TTTGAACTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGGAAC
ATGTTGCTTCAGAACCCTCAACTGGCTTATGCTTGGCTACAAGCACAGGTAGTGATGACG
AATTGTGGATCCAGAAATCGCCTTGAAAATTCTGCATCGCCAGACAAATATCCCAACACT
GCATTGCAGGCAACCCTCATACAGTCCACAGCACTGGACCTGGCTCAGGATCCAATGTGT
CAATGAACCAGCAGAATCCTCAGGCCCCTCAGGCCCAGTCTTTGAGTGGAATGCATGTCA
ACGGAGCACCTCCTCTGATGCAGGCTTCTCTGCAGGCTGGAGTTGCAGCACCAGGGCAGA
TACCAGCCACTGTAACAGGACCTGGCCCTGGTTCCTTAGCTCCTGGAGGAGGAATGCAGG
CCCAGGTTGGAATGCCAGGAAGTGGACCAGTATCCATGGAGCGGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGTTTGACTGTGAGAGACCCTGCGGTGGACCGTTCGCTACGTTCGGTGTTCGTGGG
GAACATTCCTTATGAGGCTACTGAAGAGCAATTAAAGGACATCTTTTCTGAGGTTGGACC
TGTTGTTAGTTTCAGGTTGGTATATGATAGGNGAGAACAGGAAAACCAAAGGGTTATGGC
TTCTGTGAATACCAAGACCAGGAGACAGCACTTAGTGCCATGCGAAACCTAAATGGGCGT
GAATTCAGTGGGAGAGCACTTCGAGTGGACAATGCTGCCAGCGAAAAGAACAAAGAGGAG
CTGAAGAGTCTTGGCACTGGTGCCCCTGTCATTGAGTCACCTTATGGAGAGACCATCAGT
CCCGAGGATGCCCCTGAATCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAGCAGATG
TTTGAACTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGGAAC
ATGTTGCTTCAGAACCCTCAACTGGCTTATGCTTGGCTACAAGCACAGGTAGTGATGACG
AATTGTGGATCCAGAAATCGCCTTGAAAATTCTGCATCGCCAGACAAATATCCCAACACT
GCATTGCAGGCAACCCTCATACAGTCCACAGCACTGGACCTGGCTCAGGATCCAATGTGT
CAATGAACCAGCAGAATCCTCAGGCCCCTCAGGCCCAGTCTTTGAGTGGAATGCATGTCA
ACGGAGCACCTCCTCTGATGCAGGCTTCTCTGCAGGCTGGAGTTGCAGCACCAGGGCAGA
TACCAGCCACTGTAACAGGACCTGGCCCTGGTTCCTTAGCTCCTGGAGGAGGAATGCAGG
CCCAGGTTGGAATGCCAGGAAGTGGACCAGTATCCATGGAGCGGGGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               745-886, - strand, RNAz p=0.99884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               745-886, - strand, RNAz p=0.99884

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               755-886, 191036 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE722695.1|), 
blast E-value=0, identity=97.73% 
               

               
               745-886, 502067 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM088561.1|), 
blast E-value=0, identity=97.18% 
               

               
               763-886, 4085757 BARC 9BOV Bos taurus cDNA clone 9BOV2_N22 5', mRNA sequence 
(gb|CK970067.1|), blast E-value=0, identity=97.58% 
               

               
               745-886, LB02611.CR_D02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879814.1|), 
blast E-value=0, identity=97.18% 
               

               
               745-886, 000515BPPA004721HT BPPA Bos taurus cDNA, mRNA sequence 
(gb|DY151121.1|), blast E-value=0, identity=97.18% 
               

               
               745-879, LB02987.CR.1_A13 GC_BGC-29 Bos taurus cDNA clone IMAGE 
(gb|EE370186.1|), blast E-value=0, identity=96.32%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               755-886, 191036 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE722695.1|), 
blast E-value=0, identity=97.73% 
               

               
               745-886, 502067 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM088561.1|), 
blast E-value=0, identity=97.18% 
               

               
               763-886, 4085757 BARC 9BOV Bos taurus cDNA clone 9BOV2_N22 5', mRNA sequence 
(gb|CK970067.1|), blast E-value=0, identity=97.58% 
               

               
               745-886, LB02611.CR_D02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879814.1|), 
blast E-value=0, identity=97.18% 
               

               
               745-886, 000515BPPA004721HT BPPA Bos taurus cDNA, mRNA sequence 
(gb|DY151121.1|), blast E-value=0, identity=97.18% 
               

               
               745-879, LB02987.CR.1_A13 GC_BGC-29 Bos taurus cDNA clone IMAGE 
(gb|EE370186.1|), blast E-value=0, identity=96.32%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-886, gnl|bosTau2|chr26 (4404743-4403864)
               

               
               3-886, gnl|Hg17|chr10 (53129311-53128408)
               

               
               3-886, gnl|Mm7|chr19 (30782222-30783158)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-886, gnl|bosTau2|chr26 (4404743-4403864)
               

               
               3-886, gnl|Hg17|chr10 (53129311-53128408)
               

               
               3-886, gnl|Mm7|chr19 (30782222-30783158)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	755-886, 191036 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE722695.1\|), blast E-value=0, identity=97.73%
	745-886, 502067 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM088561.1\|), blast E-value=0, identity=97.18%
	763-886, 4085757 BARC 9BOV Bos taurus cDNA clone 9BOV2_N22 5', mRNA sequence (gb\|CK970067.1\|), blast E-value=0, identity=97.58%
	745-886, LB02611.CR_D02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV879814.1\|), blast E-value=0, identity=97.18%
	745-886, 000515BPPA004721HT BPPA Bos taurus cDNA, mRNA sequence (gb\|DY151121.1\|), blast E-value=0, identity=97.18%
	745-879, LB02987.CR.1_A13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE370186.1\|), blast E-value=0, identity=96.32%

	3-886, gnl\|bosTau2\|chr26 (4404743-4403864)
	3-886, gnl\|Hg17\|chr10 (53129311-53128408)
	3-886, gnl\|Mm7\|chr19 (30782222-30783158)