Non-Coding RNA Search

Ss1.1-Pig1-138P18.5

Sequence:


               
               GCAGCCCCTGGTGCTAGGGGACAATTGCTTTGCTGACTTGGCGCACAACTGGATGGAGCT
GCCAGAGGCCTCAGGTGAGGGGGATGATGGGGGTGGGCCACGAGCCCGTGCTCGCCCCCC
CCAGTTCCTACTTGGTCTCTCAGAACAGCTGAGGCGCCAGCTGGCCAGGGCACGCCGGGC
AGCGCTGGCAGGAAAGCGACTCTCATGCCCACCTCGCCCAGAACCCGAACTGCCTACAGA
TGTCTCGCGCTTTGCAGCCCTTATGAGTTGCCGCAGTCGCCAGCCTATCATCTGCAATGA
TGTTGTCAGCTACCTCTGACCCTGCCCTCCAGCCTGGGACAATAAAGGCCTTTCTCTGGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCCCTGGTGCTAGGGGACAATTGCTTTGCTGACTTGGCGCACAACTGGATGGAGCT
GCCAGAGGCCTCAGGTGAGGGGGATGATGGGGGTGGGCCACGAGCCCGTGCTCGCCCCCC
CCAGTTCCTACTTGGTCTCTCAGAACAGCTGAGGCGCCAGCTGGCCAGGGCACGCCGGGC
AGCGCTGGCAGGAAAGCGACTCTCATGCCCACCTCGCCCAGAACCCGAACTGCCTACAGA
TGTCTCGCGCTTTGCAGCCCTTATGAGTTGCCGCAGTCGCCAGCCTATCATCTGCAATGA
TGTTGTCAGCTACCTCTGACCCTGCCCTCCAGCCTGGGACAATAAAGGCCTTTCTCTGGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57101624|ref|XP_541880.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57101624|ref|XP_541880.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               201-357, - strand, RNAz p=0.778994

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-357, - strand, RNAz p=0.778994

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-363, gnl|bosTau2|chr22 (38147279-38147640)
               

               
               2-363, gnl|Hg17|chr3 (49817110-49817469)
               

               
               2-363, gnl|Mm7|chr9 (107716239-107715880)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-363, gnl|bosTau2|chr22 (38147279-38147640)
               

               
               2-363, gnl|Hg17|chr3 (49817110-49817469)
               

               
               2-363, gnl|Mm7|chr9 (107716239-107715880)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               eru (0.120048)

	2-363, gnl\|bosTau2\|chr22 (38147279-38147640)
	2-363, gnl\|Hg17\|chr3 (49817110-49817469)
	2-363, gnl\|Mm7\|chr9 (107716239-107715880)