Ss1.1-Pig1-14E24.5
|
GTCAGGCCTGGCCCCCCATACTGGACACAGATGATTGCCAAAGAAGCGGCCTGCCCAGAT
CTACAAACCTTCCAACCCGGACACACTAGCCTACCTTGACTTCAGTGTGTCCACAACTGG
GATGCTTGCTGGAGTGAAGATGTCTCACGCAGCCACCAGTGCCTTCTGCCGTTCCATTAA
GCTGCAGTGTGAGCTCTACCCCTCTAGAGAAGTGGCCATCTGCTTGGACCCTTACTGTGG
ACTTGGGTTTGTCCTGTGGTGCCTCTGTAGTGTGTACTCCGGGCACCAGTCCATCCTCAT
CCCGCCCGCGGAGCTGGAGACCAACCCTGCCCTGTGGCTGCTTGCCGTGAGCCAGTACAA
AGTCCGGGATACGTTTGGCTCCTATTCGGTGATGGAACTTTGTACCAAGGGGCTGGGCTC
ACAGACAGAATCCCTCAAGGCACGAGGCCTGGACTTGTCCCGCGTGCGGACCTGCGTGGT
CGTAGCAGAAGAACGGCCCCGAATAGCTCTCACCCAGTCCTTCTCAAAACTGTTTAAAGA
CCTGGGCCTCCATCCGCGGGCCGTCAGCACTTCGTTTGGCTGCAGAGTGAACCTGGCAAT
TTGCTTGCAGGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCAGGCCTGGCCCCCCATACTGGACACAGATGATTGCCAAAGAAGCGGCCTGCCCAGAT
CTACAAACCTTCCAACCCGGACACACTAGCCTACCTTGACTTCAGTGTGTCCACAACTGG
GATGCTTGCTGGAGTGAAGATGTCTCACGCAGCCACCAGTGCCTTCTGCCGTTCCATTAA
GCTGCAGTGTGAGCTCTACCCCTCTAGAGAAGTGGCCATCTGCTTGGACCCTTACTGTGG
ACTTGGGTTTGTCCTGTGGTGCCTCTGTAGTGTGTACTCCGGGCACCAGTCCATCCTCAT
CCCGCCCGCGGAGCTGGAGACCAACCCTGCCCTGTGGCTGCTTGCCGTGAGCCAGTACAA
AGTCCGGGATACGTTTGGCTCCTATTCGGTGATGGAACTTTGTACCAAGGGGCTGGGCTC
ACAGACAGAATCCCTCAAGGCACGAGGCCTGGACTTGTCCCGCGTGCGGACCTGCGTGGT
CGTAGCAGAAGAACGGCCCCGAATAGCTCTCACCCAGTCCTTCTCAAAACTGTTTAAAGA
CCTGGGCCTCCATCCGCGGGCCGTCAGCACTTCGTTTGGCTGCAGAGTGAACCTGGCAAT
TTGCTTGCAGGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
125-270, gnl|bosTau2|chr13 (30032866-30032721) |
|
125-270, gnl|canFam2|chr2 (37270364-37270196) |
|
125-270, gnl|danRer3|chr2 (37471261-37471401) |
|
125-270, gnl|dasNov1|scaffold_26453 (7915-7746) |
|
125-270, gnl|echTel1|scaffold_280643 (20840-21009) |
|
125-270, gnl|fr1|chrUn (216373820-216373664) |
|
125-270, gnl|galGal2|chr2 (9378637-9378797) |
|
125-270, gnl|hg17|chr10 (377124-377292) |
|
125-270, gnl|Hg17|chr10 (377283-377139) |
|
125-270, gnl|loxAfr1|scaffold_5323 (68587-68755) |
|
125-270, gnl|mm7|chr13 (9540950-9540791) |
|
125-270, gnl|Mm7|chr13 (9540788-9540933) |
|
125-270, gnl|monDom2|scaffold_7 (23328477-23328643) |
|
125-270, gnl|oryCun1|scaffold_202355 (145090-144929) |
|
125-270, gnl|panTro1|chr8 (408698-408866) |
|
125-270, gnl|rheMac2|chr9 (293790-293958) |
|
125-270, gnl|rn3|chr17 (71484992-71485153) |
|
125-270, gnl|tetNig1|chrUn_random (132868637-132868775) |
|
125-270, gnl|xenTro1|scaffold_378 (948009-947852) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
125-270, gnl|bosTau2|chr13 (30032866-30032721) |
|
125-270, gnl|canFam2|chr2 (37270364-37270196) |
|
125-270, gnl|danRer3|chr2 (37471261-37471401) |
|
125-270, gnl|dasNov1|scaffold_26453 (7915-7746) |
|
125-270, gnl|echTel1|scaffold_280643 (20840-21009) |
|
125-270, gnl|fr1|chrUn (216373820-216373664) |
|
125-270, gnl|galGal2|chr2 (9378637-9378797) |
|
125-270, gnl|hg17|chr10 (377124-377292) |
|
125-270, gnl|Hg17|chr10 (377283-377139) |
|
125-270, gnl|loxAfr1|scaffold_5323 (68587-68755) |
|
125-270, gnl|mm7|chr13 (9540950-9540791) |
|
125-270, gnl|Mm7|chr13 (9540788-9540933) |
|
125-270, gnl|monDom2|scaffold_7 (23328477-23328643) |
|
125-270, gnl|oryCun1|scaffold_202355 (145090-144929) |
|
125-270, gnl|panTro1|chr8 (408698-408866) |
|
125-270, gnl|rheMac2|chr9 (293790-293958) |
|
125-270, gnl|rn3|chr17 (71484992-71485153) |
|
125-270, gnl|tetNig1|chrUn_random (132868637-132868775) |
|
125-270, gnl|xenTro1|scaffold_378 (948009-947852) |
