Non-Coding RNA Search

Ss1.1-Pig1-15H13.5

Sequence:


               
               TGGCAACTTTAAAAGTCAAATGAAAATGAAACCCCCCCAGGTAGATCAACAAGTAGAAAT
GTGTACTCTTGACTAATTATTAACTTTGGTGTTTATCCTGCAGTTTCAGAGTTTTCTTGC
TAGTGAATTCATTCTATTTGCTATTTTTTTTTCTTGTATTTTTCCAGGAAGAAAAAAACT
GAAGGCACATATGACTTACCTTATTGGGACCGAGCAGGTACTTCATGCATGGCTTTGCAT
CTCTTTCCATCAGAGGGAAGCCCCTGCCCTCCAGGTGGCAGTAGTGACAGAGGAGTGTCC
TTTGCAGGCCCACGTGAACTCCCCAGTACTATTAGAAAAAGGGCATTCTTCTTCTGATTG
TTTTTACTTTTCTCTAAATTCTCTTCTAGCTGATAAGTAATGAAATGAAACATAAGAATT
TCCCATAACACATATTCTGTTCTTTTTCTTCTGGAGAATTTGTCTGGTTTGCCTCATGCA
TGTGTCTAGCTTGAGACCAGGTTTCTGTGTGGTGAACGTGAACACTGGGTAAGAAGCAGA
GGATTGCGGTCCCAGTGACACAGTGTGTGTGTGTCACTCTGCTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAACTTTAAAAGTCAAATGAAAATGAAACCCCCCCAGGTAGATCAACAAGTAGAAAT
GTGTACTCTTGACTAATTATTAACTTTGGTGTTTATCCTGCAGTTTCAGAGTTTTCTTGC
TAGTGAATTCATTCTATTTGCTATTTTTTTTTCTTGTATTTTTCCAGGAAGAAAAAAACT
GAAGGCACATATGACTTACCTTATTGGGACCGAGCAGGTACTTCATGCATGGCTTTGCAT
CTCTTTCCATCAGAGGGAAGCCCCTGCCCTCCAGGTGGCAGTAGTGACAGAGGAGTGTCC
TTTGCAGGCCCACGTGAACTCCCCAGTACTATTAGAAAAAGGGCATTCTTCTTCTGATTG
TTTTTACTTTTCTCTAAATTCTCTTCTAGCTGATAAGTAATGAAATGAAACATAAGAATT
TCCCATAACACATATTCTGTTCTTTTTCTTCTGGAGAATTTGTCTGGTTTGCCTCATGCA
TGTGTCTAGCTTGAGACCAGGTTTCTGTGTGGTGAACGTGAACACTGGGTAAGAAGCAGA
GGATTGCGGTCCCAGTGACACAGTGTGTGTGTGTCACTCTGCTGTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               248-364, + strand, RNAz p=0.558332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-364, + strand, RNAz p=0.558332

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-223, gnl|bosTau2|chr1 (22650403-22650178)
               


               
               248-587, gnl|bosTau2|chr1 (22649937-22649595)
               

               
               248-587, gnl|Hg17|chr3 (100003100-100002763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr1 (22650403-22650178)
               


               
               248-587, gnl|bosTau2|chr1 (22649937-22649595)
               

               
               248-587, gnl|Hg17|chr3 (100003100-100002763)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-223, gnl\|bosTau2\|chr1 (22650403-22650178)

	248-587, gnl\|bosTau2\|chr1 (22649937-22649595)
	248-587, gnl\|Hg17\|chr3 (100003100-100002763)