Non-Coding RNA Search

Ss1.1-Pig1-16I19.5.5

Sequence:


               
               GGAGGACGAAGAGGACCTGGGATGGGGCTGCCCGGACGTGGCGGGCACCACGCGGCCCAC
TCCACCTGCTGACCTGCACAATTACATGCTCAGAATCAAAGAGATTGCGTAGAGGTGCCG
TCCTCTCCCGCTTGGGTGGGCTCTGTGTGGGACACAGCCGGGACCCTGCTCATGCTGTCG
CGGGCCGGCTGGAGTGGATTTTATACTGTGGCCCCTGCAGCTTTGCTCCTCCCGCTGGTC
CTTCCTGCTCACCTGGCATCCTCTGCCCCCAAAGGTGGAGGGCGCCCTCCTCCTGGAGCT
TGCCAAGAGGAAAGCAATCCCAGCCCTCATTCTGCCCTTTCCAAACCCCTCCAGTCTTAG
ATCACGCCCCCTGCCCCAAGACAGGGACAGGGAGCCAAGCTTGGGCCAAGGGACTACACA
ATGCCTCACCCCACCCCCTATGTCCCCTGTCTTCCCCTGAAATAGGGGGCTTCTTCGGGG
GGTCTTGTGTCACAAGCTGCACAAAGACTTTTCTCAAACCACTATTCAGGGATTTCTGTC
CTGCAGGGTGGGGCAGGGGTGGTGGCGGCTGCCTGCCCTGCTAAGGATCTTGCAATGGAC
AAAACATCTAGGGGCAGGGGACATCTGTAGCATCTGCTGGCTTCTGGGTGCCCCCCAGTC
CCTTCCCAAAACCTGGGAGCTGACTCTACAGAGGGGTCTGGGGCCAAGCCAGGCACCTTC
CTGAGATCTCAGGACTCCATCCTCTGCCCCCAGGGCTGTGGGCAGGCCCTCAAGGGGGAG
GAGCCCTCGGTCCACCCCAGAGCACTGTGGTCTGGGTGCCCAGGAACCCTGGGTGCCTCC
CGCCCACCCCTCAGCAAGGTCAACACTACGCCTTAGCTCCTCCCCCTCCGCTGACCACGC
CTTCCTCTCTGCAGGGGCAGCCACCCATTCCCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGACGAAGAGGACCTGGGATGGGGCTGCCCGGACGTGGCGGGCACCACGCGGCCCAC
TCCACCTGCTGACCTGCACAATTACATGCTCAGAATCAAAGAGATTGCGTAGAGGTGCCG
TCCTCTCCCGCTTGGGTGGGCTCTGTGTGGGACACAGCCGGGACCCTGCTCATGCTGTCG
CGGGCCGGCTGGAGTGGATTTTATACTGTGGCCCCTGCAGCTTTGCTCCTCCCGCTGGTC
CTTCCTGCTCACCTGGCATCCTCTGCCCCCAAAGGTGGAGGGCGCCCTCCTCCTGGAGCT
TGCCAAGAGGAAAGCAATCCCAGCCCTCATTCTGCCCTTTCCAAACCCCTCCAGTCTTAG
ATCACGCCCCCTGCCCCAAGACAGGGACAGGGAGCCAAGCTTGGGCCAAGGGACTACACA
ATGCCTCACCCCACCCCCTATGTCCCCTGTCTTCCCCTGAAATAGGGGGCTTCTTCGGGG
GGTCTTGTGTCACAAGCTGCACAAAGACTTTTCTCAAACCACTATTCAGGGATTTCTGTC
CTGCAGGGTGGGGCAGGGGTGGTGGCGGCTGCCTGCCCTGCTAAGGATCTTGCAATGGAC
AAAACATCTAGGGGCAGGGGACATCTGTAGCATCTGCTGGCTTCTGGGTGCCCCCCAGTC
CCTTCCCAAAACCTGGGAGCTGACTCTACAGAGGGGTCTGGGGCCAAGCCAGGCACCTTC
CTGAGATCTCAGGACTCCATCCTCTGCCCCCAGGGCTGTGGGCAGGCCCTCAAGGGGGAG
GAGCCCTCGGTCCACCCCAGAGCACTGTGGTCTGGGTGCCCAGGAACCCTGGGTGCCTCC
CGCCCACCCCTCAGCAAGGTCAACACTACGCCTTAGCTCCTCCCCCTCCGCTGACCACGC
CTTCCTCTCTGCAGGGGCAGCCACCCATTCCCCCAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-143, - strand, RNAz p=0.912776
               

               
               413-620, + strand, RNAz p=0.728875

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-143, - strand, RNAz p=0.912776
               

               
               413-620, + strand, RNAz p=0.728875

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               38-141, - strand, RNAmicro p=0.999598
               

               
               356-438, - strand, RNAmicro p=0.978072

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               38-141, - strand, RNAmicro p=0.999598
               

               
               356-438, - strand, RNAmicro p=0.978072

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_207313, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_207313, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-232, gnl|bosTau2|chr19 (8471414-8471663)
               

               
               1-232, gnl|Hg17|chr17 (29989253-29989500)
               

               
               1-232, gnl|Mm7|chr11 (82526782-82527037)
               


               
               259-620, gnl|bosTau2|chr19 (8471724-8472069)
               

               
               259-620, gnl|Hg17|chr17 (29989556-29989913)
               

               
               259-620, gnl|Mm7|chr11 (82527073-82527418)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-232, gnl|bosTau2|chr19 (8471414-8471663)
               

               
               1-232, gnl|Hg17|chr17 (29989253-29989500)
               

               
               1-232, gnl|Mm7|chr11 (82526782-82527037)
               


               
               259-620, gnl|bosTau2|chr19 (8471724-8472069)
               

               
               259-620, gnl|Hg17|chr17 (29989556-29989913)
               

               
               259-620, gnl|Mm7|chr11 (82527073-82527418)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-143, - strand, RNAz p=0.912776
	413-620, + strand, RNAz p=0.728875

	38-141, - strand, RNAmicro p=0.999598
	356-438, - strand, RNAmicro p=0.978072

	1-232, gnl\|bosTau2\|chr19 (8471414-8471663)
	1-232, gnl\|Hg17\|chr17 (29989253-29989500)
	1-232, gnl\|Mm7\|chr11 (82526782-82527037)

	259-620, gnl\|bosTau2\|chr19 (8471724-8472069)
	259-620, gnl\|Hg17\|chr17 (29989556-29989913)
	259-620, gnl\|Mm7\|chr11 (82527073-82527418)