Non-Coding RNA Search

Ss1.1-Pig1-18D02.5

Sequence:


               
               TAACATCCTCGGCCCTGCTTTCTCTGCCTCTGTCTTCTGTCTTTGTGGGCTTGGTTTGCA
TTTGGGGTGAGGGGGTGTCAGATGAGTTCGGATCCAGTGTGGGCCCTGCCAGCCTGGGTC
TCAGTGGGTGGGTACCCAGCAAAGAGGGCCCTGCCATCAGAAGGAGCCCCAAGAGCTGCC
CCAGAGTCAGTGCCCTGCCCTACCTCACAGCCCTGTGCAAGCGGCCAGCCAGCTGGACCC
CAGCTAGGAAAAGCTGCCCTACCTATCCCTACCCCAGGGACCTTGAGCCCAACCTGGCAG
TGCATGCACCCAGGCATCTCCCATGGGGCCAGCAGGACCAAGGTGGGGTGGGAGGGGCCA
TGCCAGGAGTCTCAGCAAGGCAGGGCCTTGAATGGCAGATCTTGCAGCCAGGTGCCCAGG
ACAGAAGCCCCAGCCCCAGCCTCAGCTACACCCCAGGAACCCTGGCCTGGTGAGAGAGAG
TGGGCTTGGCTTTGGGCCTGGGGAAGGGTGGGTAACCTCCAGGGGGACGGGGGTGGGCTC
CTCCAAGTTGGCCCAGGCTATCCCCCTCGTCCTGTGGTGGGGTCCCTGGGCACACCCCCT
GGAGCCACTTTCCTGGCCTTGGCAGGCCCTCCCACCCCCAGCCCTACCAGCCGCCCACCC
TGGGCTGTGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACATCCTCGGCCCTGCTTTCTCTGCCTCTGTCTTCTGTCTTTGTGGGCTTGGTTTGCA
TTTGGGGTGAGGGGGTGTCAGATGAGTTCGGATCCAGTGTGGGCCCTGCCAGCCTGGGTC
TCAGTGGGTGGGTACCCAGCAAAGAGGGCCCTGCCATCAGAAGGAGCCCCAAGAGCTGCC
CCAGAGTCAGTGCCCTGCCCTACCTCACAGCCCTGTGCAAGCGGCCAGCCAGCTGGACCC
CAGCTAGGAAAAGCTGCCCTACCTATCCCTACCCCAGGGACCTTGAGCCCAACCTGGCAG
TGCATGCACCCAGGCATCTCCCATGGGGCCAGCAGGACCAAGGTGGGGTGGGAGGGGCCA
TGCCAGGAGTCTCAGCAAGGCAGGGCCTTGAATGGCAGATCTTGCAGCCAGGTGCCCAGG
ACAGAAGCCCCAGCCCCAGCCTCAGCTACACCCCAGGAACCCTGGCCTGGTGAGAGAGAG
TGGGCTTGGCTTTGGGCCTGGGGAAGGGTGGGTAACCTCCAGGGGGACGGGGGTGGGCTC
CTCCAAGTTGGCCCAGGCTATCCCCCTCGTCCTGTGGTGGGGTCCCTGGGCACACCCCCT
GGAGCCACTTTCCTGGCCTTGGCAGGCCCTCCCACCCCCAGCCCTACCAGCCGCCCACCC
TGGGCTGTGGAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               42-158, - strand, RNAz p=0.739286
               

               
               198-357, - strand, RNAz p=0.980546
               

               
               518-635, - strand, RNAz p=0.591185

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-158, - strand, RNAz p=0.739286
               

               
               198-357, - strand, RNAz p=0.980546
               

               
               518-635, - strand, RNAz p=0.591185

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-672, gnl|bosTau2|chr7 (21763537-21762883)
               

               
               2-672, gnl|Hg17|chr5 (176849868-176849188)
               

               
               2-672, gnl|Mm7|chr13 (54594701-54594033)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-672, gnl|bosTau2|chr7 (21763537-21762883)
               

               
               2-672, gnl|Hg17|chr5 (176849868-176849188)
               

               
               2-672, gnl|Mm7|chr13 (54594701-54594033)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	42-158, - strand, RNAz p=0.739286
	198-357, - strand, RNAz p=0.980546
	518-635, - strand, RNAz p=0.591185

	2-672, gnl\|bosTau2\|chr7 (21763537-21762883)
	2-672, gnl\|Hg17\|chr5 (176849868-176849188)
	2-672, gnl\|Mm7\|chr13 (54594701-54594033)