Non-Coding RNA Search

Ss1.1-Pig1-18J02.5

Sequence:


               
               GGAATGTTCCTGCCATCGTGTTCAGGCTGTCGTACCCCACAGATCGAGCAGGCTGTGGGC
ATCGTGGGTGCTGTCATCATGCCACACAACATGTACCTGCATTCTGCCCTAGTCAAGTCC
AGACAGGTAAACCGAGCCAATAAGGAGGAAGTGCGAGAAGCCAATAAGTACTTTTTCATT
GAATCCTGCATTGCTCTCTTGGTTTCCTTTATCATCAACGTCTTTGTTGTCTCAGTCTTT
GCCGAAGCGTTTTTTGAGAAAACCAACCAGCAGGTGGTTGACGTCTGTAGAAATAGCAGC
AGTCCCCATAGTGACCTTTTTCCTGAGGACAACTCGACACTGGCTGTGGACATCTACAAA
GGGGGTGTGGTGCTAGGGTGTTACTTCGGGCCGGCGGCACTCTACATCTGGGCAGTGGGG
ATCCTGGCTGCAGGTCAGAGCTCCACCATGACAGGAACCTACTCCGGCCAGTTCGTCATG
GAGGGATTCCTGAACCTGAAGTGGTCGCGCTTCGCCCGAGTGATCCTGACGCGCTCTATC
GCCATCATCCCCACTCTGCTGGTGGCCGTCTTCCAGGATGTAGAGCATCTCACAGGGATG
AATGACTTCCTGAATGTCCTCCAGAGCTTACAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGTTCCTGCCATCGTGTTCAGGCTGTCGTACCCCACAGATCGAGCAGGCTGTGGGC
ATCGTGGGTGCTGTCATCATGCCACACAACATGTACCTGCATTCTGCCCTAGTCAAGTCC
AGACAGGTAAACCGAGCCAATAAGGAGGAAGTGCGAGAAGCCAATAAGTACTTTTTCATT
GAATCCTGCATTGCTCTCTTGGTTTCCTTTATCATCAACGTCTTTGTTGTCTCAGTCTTT
GCCGAAGCGTTTTTTGAGAAAACCAACCAGCAGGTGGTTGACGTCTGTAGAAATAGCAGC
AGTCCCCATAGTGACCTTTTTCCTGAGGACAACTCGACACTGGCTGTGGACATCTACAAA
GGGGGTGTGGTGCTAGGGTGTTACTTCGGGCCGGCGGCACTCTACATCTGGGCAGTGGGG
ATCCTGGCTGCAGGTCAGAGCTCCACCATGACAGGAACCTACTCCGGCCAGTTCGTCATG
GAGGGATTCCTGAACCTGAAGTGGTCGCGCTTCGCCCGAGTGATCCTGACGCGCTCTATC
GCCATCATCCCCACTCTGCTGGTGGCCGTCTTCCAGGATGTAGAGCATCTCACAGGGATG
AATGACTTCCTGAATGTCCTCCAGAGCTTACAACTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61816486|ref|XP_599449.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61816486|ref|XP_599449.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               113-278, gnl|bosTau2|chr5 (18734939-18734774)
               

               
               113-278, gnl|Hg17|chr12 (49675842-49675677)
               

               
               113-278, gnl|Mm7|chr15 (100388591-100388424)
               


               
               482-633, gnl|bosTau2|chr5 (18520049-18519898)
               

               
               482-633, gnl|Hg17|chr12 (49672391-49672240)
               

               
               482-633, gnl|Mm7|chr15 (100386664-100386513)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-278, gnl|bosTau2|chr5 (18734939-18734774)
               

               
               113-278, gnl|Hg17|chr12 (49675842-49675677)
               

               
               113-278, gnl|Mm7|chr15 (100388591-100388424)
               


               
               482-633, gnl|bosTau2|chr5 (18520049-18519898)
               

               
               482-633, gnl|Hg17|chr12 (49672391-49672240)
               

               
               482-633, gnl|Mm7|chr15 (100386664-100386513)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	113-278, gnl\|bosTau2\|chr5 (18734939-18734774)
	113-278, gnl\|Hg17\|chr12 (49675842-49675677)
	113-278, gnl\|Mm7\|chr15 (100388591-100388424)

	482-633, gnl\|bosTau2\|chr5 (18520049-18519898)
	482-633, gnl\|Hg17\|chr12 (49672391-49672240)
	482-633, gnl\|Mm7\|chr15 (100386664-100386513)