Non-Coding RNA Search

Ss1.1-Pig1-19F16.5

Sequence:


               
               CTGCAGGTCCCGCACTACAGCCCCTCGTACCCGCCCATCACCCGCTCGCAGTACGACTAC
ACAGACCACCAGAACTCCGGCTCCTACTACAGCCACGCGGCGGGCCAGGGCTCGGGCCTC
TACTCCACCTTCACCTACATGAACCCGGCGCAGCGGCCCATGTACACCCCCATCGCCGAC
ACCTCCGGGGTCCCTTCCATCCCGCAGACCCACAGCCCCCAGCACTGGGAACAGCCCGTC
TACACACAGCTCACCAGACCTTGAGGAGACCTTAGACAAAGAGTGATGATGGCCCGTGAT
GCGCATAAAAGTAACCCACCGAAGAAAGACCGTAACCCACCAGAATTTCCTTTGGACCTT
TTTTTTTTTTTTTTCTCTCTTTGTTTTTTAAAGACCTTGACACTAAAGGCAACTCGAACC
CACATTCCAAGACAGAAACATTAGCTATCCAAACGCATTACCACCTTGTGGCGAGTCAGT
GGCCAGGCCACTCTTGCTTGGCTAGATGGACCAGCAGAACCGACAGGAACCTGGACTTGA
AACCTTCCAAGCCCGCGTGGAGGGGGATGGAGATTCAGTGTGACCAGTTTGCTCAATCTC
TCTGCCTGTTTGGACTTTGTAATTATTTTTTAGCCGTAATTAAAGAAAAAAGTCCTCTGT
GAGGAATATTCTCTATTTTAAATATTTTTAGTATGTACTGTGTATGATTCATTACCATTT
TGAGGGGATTTATACATATTTTTAGATAAAAAATTAAATGCTCTTATTTTTCCAACAAGC
TAAACTACTTAGTTGAACAGTGTGCCCAGCTCTTCTTGCAACCAGAGTATTTTTGTACAG
ATTTGCTTTCTCTTACAAACAAACAAAAAGTGTGTGTGTGTCGTATTAACCCACAAACCC
CACAAATGTGTGTTTTGTGATCAGTTTGGGGGGAGGGGGGGTTAGCTTTGCTTAATTCCT
CAGGCTTTCTGATTCCAAGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGTCCCGCACTACAGCCCCTCGTACCCGCCCATCACCCGCTCGCAGTACGACTAC
ACAGACCACCAGAACTCCGGCTCCTACTACAGCCACGCGGCGGGCCAGGGCTCGGGCCTC
TACTCCACCTTCACCTACATGAACCCGGCGCAGCGGCCCATGTACACCCCCATCGCCGAC
ACCTCCGGGGTCCCTTCCATCCCGCAGACCCACAGCCCCCAGCACTGGGAACAGCCCGTC
TACACACAGCTCACCAGACCTTGAGGAGACCTTAGACAAAGAGTGATGATGGCCCGTGAT
GCGCATAAAAGTAACCCACCGAAGAAAGACCGTAACCCACCAGAATTTCCTTTGGACCTT
TTTTTTTTTTTTTTCTCTCTTTGTTTTTTAAAGACCTTGACACTAAAGGCAACTCGAACC
CACATTCCAAGACAGAAACATTAGCTATCCAAACGCATTACCACCTTGTGGCGAGTCAGT
GGCCAGGCCACTCTTGCTTGGCTAGATGGACCAGCAGAACCGACAGGAACCTGGACTTGA
AACCTTCCAAGCCCGCGTGGAGGGGGATGGAGATTCAGTGTGACCAGTTTGCTCAATCTC
TCTGCCTGTTTGGACTTTGTAATTATTTTTTAGCCGTAATTAAAGAAAAAAGTCCTCTGT
GAGGAATATTCTCTATTTTAAATATTTTTAGTATGTACTGTGTATGATTCATTACCATTT
TGAGGGGATTTATACATATTTTTAGATAAAAAATTAAATGCTCTTATTTTTCCAACAAGC
TAAACTACTTAGTTGAACAGTGTGCCCAGCTCTTCTTGCAACCAGAGTATTTTTGTACAG
ATTTGCTTTCTCTTACAAACAAACAAAAAGTGTGTGTGTGTCGTATTAACCCACAAACCC
CACAAATGTGTGTTTTGTGATCAGTTTGGGGGGAGGGGGGGTTAGCTTTGCTTAATTCCT
CAGGCTTTCTGATTCCAAGGAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58701003|gb|AAW81249.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58701003|gb|AAW81249.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               119-867, gnl|bosTau2|chr19 (53875134-53874352)
               

               
               119-867, gnl|Hg17|chr17 (67631978-67632737)
               

               
               119-867, gnl|Mm7|chr11 (112894410-112895183)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-867, gnl|bosTau2|chr19 (53875134-53874352)
               

               
               119-867, gnl|Hg17|chr17 (67631978-67632737)
               

               
               119-867, gnl|Mm7|chr11 (112894410-112895183)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	119-867, gnl\|bosTau2\|chr19 (53875134-53874352)
	119-867, gnl\|Hg17\|chr17 (67631978-67632737)
	119-867, gnl\|Mm7\|chr11 (112894410-112895183)