Non-Coding RNA Search

Ss1.1-Pig1-19H24.5

Sequence:


               
               GGGTTGGCCAGAGTGCCTCTTGTGATGGCTTCCTGCATCTCCCTGGGTGAGCCAGTGTGT
GCCCGGCACCCGCGTCAGACTGAGCTCTTCCAGCTGCCTCAGAGTGAATTCCTTCAATTG
AGAAAATATGTTTTTTTGCTATATATACTATTGTGTGTATGAGTGTGATACACTGCAAAC
CCTGGACTATCTCGTGAGAAGGACAGTATGCATTTATAGAATGCTGAGTCTACTCGATGA
ATGAGGTTGCCCAGTCACAAACAATCAGAGAAAATGCCCTTTCACCTCCTCCCACCCTCT
CTCAGCACCCTTCTCCTGTTTCATCGAGCTGTCCTACCCAGGCTGACACAGTGAGGGGCA
CTGAGAATCTGTATGTATATAAAGATGTAGGAAGAACTAAGAACCGTGACAGGAATTTGT
TGAGCTTCTTCCCATGACTGTGATCTTACCCTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTGGCCAGAGTGCCTCTTGTGATGGCTTCCTGCATCTCCCTGGGTGAGCCAGTGTGT
GCCCGGCACCCGCGTCAGACTGAGCTCTTCCAGCTGCCTCAGAGTGAATTCCTTCAATTG
AGAAAATATGTTTTTTTGCTATATATACTATTGTGTGTATGAGTGTGATACACTGCAAAC
CCTGGACTATCTCGTGAGAAGGACAGTATGCATTTATAGAATGCTGAGTCTACTCGATGA
ATGAGGTTGCCCAGTCACAAACAATCAGAGAAAATGCCCTTTCACCTCCTCCCACCCTCT
CTCAGCACCCTTCTCCTGTTTCATCGAGCTGTCCTACCCAGGCTGACACAGTGAGGGGCA
CTGAGAATCTGTATGTATATAAAGATGTAGGAAGAACTAAGAACCGTGACAGGAATTTGT
TGAGCTTCTTCCCATGACTGTGATCTTACCCTGTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               268-379, - strand, RNAz p=0.830017
               

               
               290-400, + strand, RNAz p=0.559415

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-379, - strand, RNAz p=0.830017
               

               
               290-400, + strand, RNAz p=0.559415

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-451, gnl|bosTau2|chr1 (77843161-77842695)
               

               
               5-451, gnl|canFam2|chr23 (39699477-39699731)
               

               
               5-451, gnl|dasNov1|scaffold_2063 (71007-70707)
               

               
               5-451, gnl|echTel1|scaffold_278186 (3471-3195)
               

               
               5-451, gnl|hg17|chr3 (141778260-141778560)
               

               
               5-451, gnl|Hg17|chr3 (141778258-141778735)
               

               
               5-451, gnl|loxAfr1|scaffold_3560 (22206-21925)
               

               
               5-451, gnl|mm7|chr9 (97086709-97086405)
               

               
               5-451, gnl|Mm7|chr9 (97086700-97086239)
               

               
               5-451, gnl|monDom2|scaffold_24 (36935576-36935982)
               

               
               5-451, gnl|oryCun1|scaffold_177229 (69022-68746)
               

               
               5-451, gnl|panTro1|chr2 (144312971-144313271)
               

               
               5-451, gnl|rheMac2|chr2 (147241941-147241642)
               

               
               5-451, gnl|rn3|chr8 (102367449-102367753)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-451, gnl|bosTau2|chr1 (77843161-77842695)
               

               
               5-451, gnl|canFam2|chr23 (39699477-39699731)
               

               
               5-451, gnl|dasNov1|scaffold_2063 (71007-70707)
               

               
               5-451, gnl|echTel1|scaffold_278186 (3471-3195)
               

               
               5-451, gnl|hg17|chr3 (141778260-141778560)
               

               
               5-451, gnl|Hg17|chr3 (141778258-141778735)
               

               
               5-451, gnl|loxAfr1|scaffold_3560 (22206-21925)
               

               
               5-451, gnl|mm7|chr9 (97086709-97086405)
               

               
               5-451, gnl|Mm7|chr9 (97086700-97086239)
               

               
               5-451, gnl|monDom2|scaffold_24 (36935576-36935982)
               

               
               5-451, gnl|oryCun1|scaffold_177229 (69022-68746)
               

               
               5-451, gnl|panTro1|chr2 (144312971-144313271)
               

               
               5-451, gnl|rheMac2|chr2 (147241941-147241642)
               

               
               5-451, gnl|rn3|chr8 (102367449-102367753)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	268-379, - strand, RNAz p=0.830017
	290-400, + strand, RNAz p=0.559415

	5-451, gnl\|bosTau2\|chr1 (77843161-77842695)
	5-451, gnl\|canFam2\|chr23 (39699477-39699731)
	5-451, gnl\|dasNov1\|scaffold_2063 (71007-70707)
	5-451, gnl\|echTel1\|scaffold_278186 (3471-3195)
	5-451, gnl\|hg17\|chr3 (141778260-141778560)
	5-451, gnl\|Hg17\|chr3 (141778258-141778735)
	5-451, gnl\|loxAfr1\|scaffold_3560 (22206-21925)
	5-451, gnl\|mm7\|chr9 (97086709-97086405)
	5-451, gnl\|Mm7\|chr9 (97086700-97086239)
	5-451, gnl\|monDom2\|scaffold_24 (36935576-36935982)
	5-451, gnl\|oryCun1\|scaffold_177229 (69022-68746)
	5-451, gnl\|panTro1\|chr2 (144312971-144313271)
	5-451, gnl\|rheMac2\|chr2 (147241941-147241642)
	5-451, gnl\|rn3\|chr8 (102367449-102367753)