Ss1.1-Pig1-1B16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAATATATAACCATAGTAGTCATTTAAAAAAATATATTCTGAAAGCTTTGCAAATTTT AAGAGAAGAGTCGAAGCTCTGCGAGACCCAATATTTGCCAATAAGAATGGTTATGATAAT TAGCACCATGGAGCCTCAGGTGTCAAATGGCCCGACATCCAATACGAGCAATGGACCCTC CAGCAACAATAGAAACTGTCCTTCTCCCATGCAGACAGGGGCAGCCACAGATGACAGCAA AACCAACCTCATAGTCAACTATTTACCCCAGAATATGACCCAAGAGGAATTCAGGAGTCT CTTTGGGAGCATTGGTGAAATAGAATCCTGCAAACTCGTGAGAGACAAAATTACAGGACA GAGTTTAGGGTATGGATTCGTTAACTATATTGACCCAAAGGATGCAGAGAAAGCCATCAA CACTTTAAATGGACTCAGACTCCAGACCAAAACCATAAAGGTCTCATACGCCCGTCCGAG CTCTGCCTCAATCAGGGATGCTAACCTGTACGTTAGCGGCCTTCCCAAAACCATGACGCA GAAGGAACTGGAGCAGCTTTTCTCGCAATATGGCCGCATCATCACCTCACGAATCCTGGT CGATCAAGTCACAGGAGTATCCAGAGGGGTGGGATTCATCCGGTTTGATAAGAGGATTGA GGCAGAAGAAGCCATCAAAGGGCTGAATGGCCAGAAGCCCAGCGGTGCTACAGAACCGAT TACTGTGAAGTTTGCCAACAACCCCAGCCAGAAGTCCAGCCAGGCCCTGCTCTCCCAGCT CTACCAGTCCCCAAACCGGCGCTACCCCGGCCCACTTCACCACCAGGCTCAGAGGTTCAG GCTGGACAATTTGCTTAATATGGCCTATGGCGTAAAGAGGTTCTCCCCAATCACCATTGA CGGGATGACAAGCCTTGTGGGAATGAACATCCCTGGTCACACAGGAACGGGCTGGTGCAT CTTTGTCTACAACCTGTCTCCTGATTCCGACGAGAGTGTCCTCTGGCAGCTCTTCGGCCC CTTCGGCGCAGTGAACAACGTCAAAGTCATCCGAGACTTCAATACCAACAAGTGCAAGGG ATTCGGCTTTGTCACCATGACCAACTATGACGAGGCAGCCATGGCCATCGCCAGCCTCAA CGGGTACCGCCTGGGAGACCGAGTGCTGCAAGTTTCCTTTAAAACCAACAAAGCCCACAA GTCCTGAATTTCCCATCCTTACTTATTAAAAAATATATATAAATATATACGAACAAACCA CACGCGCGCACACACACACATACACACGCACACACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAATATATAACCATAGTAGTCATTTAAAAAAATATATTCTGAAAGCTTTGCAAATTTT AAGAGAAGAGTCGAAGCTCTGCGAGACCCAATATTTGCCAATAAGAATGGTTATGATAAT TAGCACCATGGAGCCTCAGGTGTCAAATGGCCCGACATCCAATACGAGCAATGGACCCTC CAGCAACAATAGAAACTGTCCTTCTCCCATGCAGACAGGGGCAGCCACAGATGACAGCAA AACCAACCTCATAGTCAACTATTTACCCCAGAATATGACCCAAGAGGAATTCAGGAGTCT CTTTGGGAGCATTGGTGAAATAGAATCCTGCAAACTCGTGAGAGACAAAATTACAGGACA GAGTTTAGGGTATGGATTCGTTAACTATATTGACCCAAAGGATGCAGAGAAAGCCATCAA CACTTTAAATGGACTCAGACTCCAGACCAAAACCATAAAGGTCTCATACGCCCGTCCGAG CTCTGCCTCAATCAGGGATGCTAACCTGTACGTTAGCGGCCTTCCCAAAACCATGACGCA GAAGGAACTGGAGCAGCTTTTCTCGCAATATGGCCGCATCATCACCTCACGAATCCTGGT CGATCAAGTCACAGGAGTATCCAGAGGGGTGGGATTCATCCGGTTTGATAAGAGGATTGA GGCAGAAGAAGCCATCAAAGGGCTGAATGGCCAGAAGCCCAGCGGTGCTACAGAACCGAT TACTGTGAAGTTTGCCAACAACCCCAGCCAGAAGTCCAGCCAGGCCCTGCTCTCCCAGCT CTACCAGTCCCCAAACCGGCGCTACCCCGGCCCACTTCACCACCAGGCTCAGAGGTTCAG GCTGGACAATTTGCTTAATATGGCCTATGGCGTAAAGAGGTTCTCCCCAATCACCATTGA CGGGATGACAAGCCTTGTGGGAATGAACATCCCTGGTCACACAGGAACGGGCTGGTGCAT CTTTGTCTACAACCTGTCTCCTGATTCCGACGAGAGTGTCCTCTGGCAGCTCTTCGGCCC CTTCGGCGCAGTGAACAACGTCAAAGTCATCCGAGACTTCAATACCAACAAGTGCAAGGG ATTCGGCTTTGTCACCATGACCAACTATGACGAGGCAGCCATGGCCATCGCCAGCCTCAA CGGGTACCGCCTGGGAGACCGAGTGCTGCAAGTTTCCTTTAAAACCAACAAAGCCCACAA GTCCTGAATTTCCCATCCTTACTTATTAAAAAATATATATAAATATATACGAACAAACCA CACGCGCGCACACACACACATACACACGCACACACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1077-1196, - strand, RNAz p=0.662626 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1077-1196, - strand, RNAz p=0.662626 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 115-357, gnl|bosTau2|chr3 (65663966-65664208) | |
| 115-357, gnl|canFam2|chr15 (13945078-13944781) | |
| 115-357, gnl|danRer3|chr4 (13251162-13250881) | |
| 115-357, gnl|dasNov1|scaffold_87380 (2416-2120) | |
| 115-357, gnl|echTel1|scaffold_321918 (46859-46563) | |
| 115-357, gnl|fr1|chrUn (48140528-48140813) | |
| 115-357, gnl|galGal2|chr8 (23831491-23831767) | |
| 115-357, gnl|hg17|chr1 (50322626-50322902) | |
| 115-357, gnl|Hg17|chr1 (50322648-50322890) | |
| 115-357, gnl|loxAfr1|scaffold_5771 (54790-54481) | |
| 115-357, gnl|mm7|chr4 (109627973-109627706) | |
| 115-357, gnl|Mm7|chr4 (109627961-109627719) | |
| 115-357, gnl|monDom2|scaffold_70 (3356665-3356394) | |
| 115-357, gnl|oryCun1|scaffold_206497 (90246-89969) | |
| 115-357, gnl|panTro1|chr1 (48518090-48518366) | |
| 115-357, gnl|rheMac2|chr1 (52966995-52967271) | |
| 115-357, gnl|rn3|chr5 (131738262-131737995) | |
| 115-357, gnl|tetNig1|chr1 (10883115-10883398) | |
| 115-357, gnl|xenTro1|scaffold_14 (161262-161001) | |
| 612-841, gnl|bosTau2|chr3 (65708439-65708668) | |
| 612-841, gnl|Hg17|chr1 (50373250-50373479) | |
| 612-841, gnl|Mm7|chr4 (109588093-109587864) | |
| 878-1290, gnl|bosTau2|chr3 (65713402-65713814) | |
| 878-1290, gnl|canFam2|chr15 (13895960-13895606) | |
| 878-1290, gnl|danRer3|chr4 (13185982-13185632) | |
| 878-1290, gnl|dasNov1|scaffold_34175 (45740-45386) | |
| 878-1290, gnl|echTel1|scaffold_319811 (44823-45177) | |
| 878-1290, gnl|fr1|chrUn (48170009-48170364) | |
| 878-1290, gnl|galGal2|chr8 (23869233-23869583) | |
| 878-1290, gnl|hg17|chr1 (50378521-50378875) | |
| 878-1290, gnl|Hg17|chr1 (50378541-50378949) | |
| 878-1290, gnl|loxAfr1|scaffold_5771 (8200-7846) | |
| 878-1290, gnl|mm7|chr4 (109583122-109582768) | |
| 878-1290, gnl|Mm7|chr4 (109583100-109582699) | |
| 878-1290, gnl|monDom2|scaffold_70 (3298086-3297731) | |
| 878-1290, gnl|oryCun1|scaffold_209997 (47895-48249) | |
| 878-1290, gnl|panTro1|chr1 (48574522-48574876) | |
| 878-1290, gnl|rheMac2|chr1 (53021620-53021974) | |
| 878-1290, gnl|rn3|chr5 (131677785-131677431) | |
| 878-1290, gnl|tetNig1|chr1 (10911836-10912191) | |
| 878-1290, gnl|xenTro1|scaffold_14 (134096-133746) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-357, gnl|bosTau2|chr3 (65663966-65664208) | |
| 115-357, gnl|canFam2|chr15 (13945078-13944781) | |
| 115-357, gnl|danRer3|chr4 (13251162-13250881) | |
| 115-357, gnl|dasNov1|scaffold_87380 (2416-2120) | |
| 115-357, gnl|echTel1|scaffold_321918 (46859-46563) | |
| 115-357, gnl|fr1|chrUn (48140528-48140813) | |
| 115-357, gnl|galGal2|chr8 (23831491-23831767) | |
| 115-357, gnl|hg17|chr1 (50322626-50322902) | |
| 115-357, gnl|Hg17|chr1 (50322648-50322890) | |
| 115-357, gnl|loxAfr1|scaffold_5771 (54790-54481) | |
| 115-357, gnl|mm7|chr4 (109627973-109627706) | |
| 115-357, gnl|Mm7|chr4 (109627961-109627719) | |
| 115-357, gnl|monDom2|scaffold_70 (3356665-3356394) | |
| 115-357, gnl|oryCun1|scaffold_206497 (90246-89969) | |
| 115-357, gnl|panTro1|chr1 (48518090-48518366) | |
| 115-357, gnl|rheMac2|chr1 (52966995-52967271) | |
| 115-357, gnl|rn3|chr5 (131738262-131737995) | |
| 115-357, gnl|tetNig1|chr1 (10883115-10883398) | |
| 115-357, gnl|xenTro1|scaffold_14 (161262-161001) | |
| 612-841, gnl|bosTau2|chr3 (65708439-65708668) | |
| 612-841, gnl|Hg17|chr1 (50373250-50373479) | |
| 612-841, gnl|Mm7|chr4 (109588093-109587864) | |
| 878-1290, gnl|bosTau2|chr3 (65713402-65713814) | |
| 878-1290, gnl|canFam2|chr15 (13895960-13895606) | |
| 878-1290, gnl|danRer3|chr4 (13185982-13185632) | |
| 878-1290, gnl|dasNov1|scaffold_34175 (45740-45386) | |
| 878-1290, gnl|echTel1|scaffold_319811 (44823-45177) | |
| 878-1290, gnl|fr1|chrUn (48170009-48170364) | |
| 878-1290, gnl|galGal2|chr8 (23869233-23869583) | |
| 878-1290, gnl|hg17|chr1 (50378521-50378875) | |
| 878-1290, gnl|Hg17|chr1 (50378541-50378949) | |
| 878-1290, gnl|loxAfr1|scaffold_5771 (8200-7846) | |
| 878-1290, gnl|mm7|chr4 (109583122-109582768) | |
| 878-1290, gnl|Mm7|chr4 (109583100-109582699) | |
| 878-1290, gnl|monDom2|scaffold_70 (3298086-3297731) | |
| 878-1290, gnl|oryCun1|scaffold_209997 (47895-48249) | |
| 878-1290, gnl|panTro1|chr1 (48574522-48574876) | |
| 878-1290, gnl|rheMac2|chr1 (53021620-53021974) | |
| 878-1290, gnl|rn3|chr5 (131677785-131677431) | |
| 878-1290, gnl|tetNig1|chr1 (10911836-10912191) | |
| 878-1290, gnl|xenTro1|scaffold_14 (134096-133746) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.354904) | |
| ece (0.229305) | |
| sug (0.127291) |