Non-Coding RNA Search

Ss1.1-Pig1-21H14.5

Sequence:


               
               TGCTACTGCGAGGGGGAGGGAAGTGGGGCCGGGGGACGTGGCGGTTTCAACCTCTATGTG
ACGGACGCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTCGTG
GGTAACGGGGCTTCCGGACGGCCGGTCGCCCCCAGCACCCCACACGGCAGCGCTGCCCGC
CTATGGGATCGAAGGAAAGCCCGTTTTGGCCTGAGTGCGGCTGAAGACATCACCCCCCGC
TTCATGGCAGCCTGTGAGCAGCAAGCTGTGACTCTCACCTTTCAGGACGACAGGGCATCC
ATGACCCTCTATGGGGGGCCCTCACCGCTGGACTTTGACCTATCCAAGGTGCCTGGCCCG
GAGGCAGCATCCAGGTTGCGGGCACTGACACTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTACTGCGAGGGGGAGGGAAGTGGGGCCGGGGGACGTGGCGGTTTCAACCTCTATGTG
ACGGACGCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTCGTG
GGTAACGGGGCTTCCGGACGGCCGGTCGCCCCCAGCACCCCACACGGCAGCGCTGCCCGC
CTATGGGATCGAAGGAAAGCCCGTTTTGGCCTGAGTGCGGCTGAAGACATCACCCCCCGC
TTCATGGCAGCCTGTGAGCAGCAAGCTGTGACTCTCACCTTTCAGGACGACAGGGCATCC
ATGACCCTCTATGGGGGGCCCTCACCGCTGGACTTTGACCTATCCAAGGTGCCTGGCCCG
GAGGCAGCATCCAGGTTGCGGGCACTGACACTGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55962675|emb|CAI12761.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55962675|emb|CAI12761.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               57-195, gnl|bosTau2|chr11 (86322438-86322578)
               

               
               57-195, gnl|Hg17|chr9 (137162929-137163060)
               


               
               243-396, gnl|bosTau2|chr11 (86322850-86323003)
               

               
               243-396, gnl|canFam2|chr9 (51972018-51971593)
               

               
               243-396, gnl|dasNov1|scaffold_184281 (1434-991)
               

               
               243-396, gnl|echTel1|scaffold_242792 (1165-1568)
               

               
               243-396, gnl|hg17|chr9 (137163016-137163442)
               

               
               243-396, gnl|Hg17|chr9 (137163339-137163492)
               

               
               243-396, gnl|mm7|chr2 (25467950-25467570)
               

               
               243-396, gnl|Mm7|chr2 (25467671-25467518)
               

               
               243-396, gnl|monDom2|scaffold_1 (188297621-188297170)
               

               
               243-396, gnl|panTro1|chr11_random (10787117-10787543)
               

               
               243-396, gnl|rheMac2|chr15 (1266011-1265575)
               

               
               243-396, gnl|rn3|chr3 (3626710-3626330)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-195, gnl|bosTau2|chr11 (86322438-86322578)
               

               
               57-195, gnl|Hg17|chr9 (137162929-137163060)
               


               
               243-396, gnl|bosTau2|chr11 (86322850-86323003)
               

               
               243-396, gnl|canFam2|chr9 (51972018-51971593)
               

               
               243-396, gnl|dasNov1|scaffold_184281 (1434-991)
               

               
               243-396, gnl|echTel1|scaffold_242792 (1165-1568)
               

               
               243-396, gnl|hg17|chr9 (137163016-137163442)
               

               
               243-396, gnl|Hg17|chr9 (137163339-137163492)
               

               
               243-396, gnl|mm7|chr2 (25467950-25467570)
               

               
               243-396, gnl|Mm7|chr2 (25467671-25467518)
               

               
               243-396, gnl|monDom2|scaffold_1 (188297621-188297170)
               

               
               243-396, gnl|panTro1|chr11_random (10787117-10787543)
               

               
               243-396, gnl|rheMac2|chr15 (1266011-1265575)
               

               
               243-396, gnl|rn3|chr3 (3626710-3626330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	57-195, gnl\|bosTau2\|chr11 (86322438-86322578)
	57-195, gnl\|Hg17\|chr9 (137162929-137163060)

	243-396, gnl\|bosTau2\|chr11 (86322850-86323003)
	243-396, gnl\|canFam2\|chr9 (51972018-51971593)
	243-396, gnl\|dasNov1\|scaffold_184281 (1434-991)
	243-396, gnl\|echTel1\|scaffold_242792 (1165-1568)
	243-396, gnl\|hg17\|chr9 (137163016-137163442)
	243-396, gnl\|Hg17\|chr9 (137163339-137163492)
	243-396, gnl\|mm7\|chr2 (25467950-25467570)
	243-396, gnl\|Mm7\|chr2 (25467671-25467518)
	243-396, gnl\|monDom2\|scaffold_1 (188297621-188297170)
	243-396, gnl\|panTro1\|chr11_random (10787117-10787543)
	243-396, gnl\|rheMac2\|chr15 (1266011-1265575)
	243-396, gnl\|rn3\|chr3 (3626710-3626330)