Non-Coding RNA Search

Ss1.1-Pig1-21H19.5

Sequence:


               
               AAAGAGCNGCGACAGCCCGGCCCGCCTAATATCGTGGTCGCCATTGCAGGAAATAAGTGT
GATCTTATCGACGTAAGGGAGGTCCTGGAGAGAGACGCCAAGGACTACGCCGACTCCATC
CATGCAATTTTTGCAGAGACCAGCGCAAAAAACGCCATAAACATAAACGAACTGTTTATA
GAAATTAGTCGAAGAATTCCATCCACGGATGCCAGCCCGCCGTCCGGCGGTAAAGGCTTC
AAACTCCGGAGACAGCCTTCAGAGCCAAAGCGGAGCTGCTGCTGACGGAGCCTCGGCCTC
CGGGCTCGACGATGAAGTAGGTGGTTCTGAAGGTTGGCAGGAGGGCTGGGGCCCTGTCAC
CAGGTGTCGCCCAGCCGATCGTGGTTCTTCTCTGGGCACAAAGGATTCACAGAAATTGAC
CAGTTCCATTTCCTCTCTGGAGAACTTGCAGCAGCCGGACCTTTCCCGTCTTGCGGAACT
CCTCNTGTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGCNGCGACAGCCCGGCCCGCCTAATATCGTGGTCGCCATTGCAGGAAATAAGTGT
GATCTTATCGACGTAAGGGAGGTCCTGGAGAGAGACGCCAAGGACTACGCCGACTCCATC
CATGCAATTTTTGCAGAGACCAGCGCAAAAAACGCCATAAACATAAACGAACTGTTTATA
GAAATTAGTCGAAGAATTCCATCCACGGATGCCAGCCCGCCGTCCGGCGGTAAAGGCTTC
AAACTCCGGAGACAGCCTTCAGAGCCAAAGCGGAGCTGCTGCTGACGGAGCCTCGGCCTC
CGGGCTCGACGATGAAGTAGGTGGTTCTGAAGGTTGGCAGGAGGGCTGGGGCCCTGTCAC
CAGGTGTCGCCCAGCCGATCGTGGTTCTTCTCTGGGCACAAAGGATTCACAGAAATTGAC
CAGTTCCATTTCCTCTCTGGAGAACTTGCAGCAGCCGGACCTTTCCCGTCTTGCGGAACT
CCTCNTGTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13937861|gb|AAH07036.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13937861|gb|AAH07036.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-454, gnl|bosTau2|chr8 (8814003-8813559)
               

               
               1-454, gnl|Hg17|chr20 (56361924-56368330)
               

               
               1-454, gnl|Mm7|chr2 (173439683-173445660)
               


               
               188-453, gnl|bosTau2|chr13 (39315214-39314952)
               

               
               188-453, gnl|Hg17|chr20 (56368068-56368329)
               

               
               188-453, gnl|Mm7|chr2 (173445416-173445659)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr8 (8814003-8813559)
               

               
               1-454, gnl|Hg17|chr20 (56361924-56368330)
               

               
               1-454, gnl|Mm7|chr2 (173439683-173445660)
               


               
               188-453, gnl|bosTau2|chr13 (39315214-39314952)
               

               
               188-453, gnl|Hg17|chr20 (56368068-56368329)
               

               
               188-453, gnl|Mm7|chr2 (173445416-173445659)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-454, gnl\|bosTau2\|chr8 (8814003-8813559)
	1-454, gnl\|Hg17\|chr20 (56361924-56368330)
	1-454, gnl\|Mm7\|chr2 (173439683-173445660)

	188-453, gnl\|bosTau2\|chr13 (39315214-39314952)
	188-453, gnl\|Hg17\|chr20 (56368068-56368329)
	188-453, gnl\|Mm7\|chr2 (173445416-173445659)