Non-Coding RNA Search

Ss1.1-Pig1-22P04.5

Sequence:


               
               GACACTTCTTCACATACTTACACACACCAGGCATTTATTTAAAAATATAAAATGGTCCAT
TAGGTTTGGGTTTTTTATTATTATTTAAAAATATATCCTTTGGATACAGTTTTAAATGGC
TTTTAAGTATCTGCATAGAGATAATCCTAAATCTCTGTAAGCCCAACATTTTTTACATTT
TCCCCAGTATTTTCATATACAAGTTGACTTTAATTTTGTTCGGGTGGTGTTACTTTTTTA
CATGGCTTTTTAGTTTAGAAACTTCTGATGAGCAAATAAATACATCTATCTGCATGTTGG
AAGTCCATCTGCCAGCACACCTGCTTAAAGTCCAATGAAAGCACATAACCAGGCTCTGAA
TGGGTTATATTTTATCATGGTGCTCCCAGAATCCTTTGACCTCACTCTGCTTTCTAGTCT
GCTTGTGACACTGGACAGTCCTTTCTTACAGAGCTATTATATGTTCTAGGCTACGAAGGG
TTAAGTAATCCCAAAAATGAGGTATGTCATACCCACACGTCTTTTATCTCTAGAAGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACTTCTTCACATACTTACACACACCAGGCATTTATTTAAAAATATAAAATGGTCCAT
TAGGTTTGGGTTTTTTATTATTATTTAAAAATATATCCTTTGGATACAGTTTTAAATGGC
TTTTAAGTATCTGCATAGAGATAATCCTAAATCTCTGTAAGCCCAACATTTTTTACATTT
TCCCCAGTATTTTCATATACAAGTTGACTTTAATTTTGTTCGGGTGGTGTTACTTTTTTA
CATGGCTTTTTAGTTTAGAAACTTCTGATGAGCAAATAAATACATCTATCTGCATGTTGG
AAGTCCATCTGCCAGCACACCTGCTTAAAGTCCAATGAAAGCACATAACCAGGCTCTGAA
TGGGTTATATTTTATCATGGTGCTCCCAGAATCCTTTGACCTCACTCTGCTTTCTAGTCT
GCTTGTGACACTGGACAGTCCTTTCTTACAGAGCTATTATATGTTCTAGGCTACGAAGGG
TTAAGTAATCCCAAAAATGAGGTATGTCATACCCACACGTCTTTTATCTCTAGAAGCTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr14 (45337571-45337029)
               

               
               1-540, gnl|Hg17|chr8 (93039579-93039025)
               

               
               1-540, gnl|Mm7|chr4 (13819060-13819660)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr14 (45337571-45337029)
               

               
               1-540, gnl|Hg17|chr8 (93039579-93039025)
               

               
               1-540, gnl|Mm7|chr4 (13819060-13819660)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)
               

               
               bla (0.124347)

	1-540, gnl\|bosTau2\|chr14 (45337571-45337029)
	1-540, gnl\|Hg17\|chr8 (93039579-93039025)
	1-540, gnl\|Mm7\|chr4 (13819060-13819660)