Non-Coding RNA Search

Ss1.1-Pig1-23F07.5

Sequence:


               
               GGAGCGCTGGCTAAGGGCCTTTTTTGGCCGGAATTGCTTCCCCCTTAGTCCGCGTCTTTC
CTCCTCCTCCGCCAAGTGTAGACTCGGAGGCTCTTTGGCCCAGGCCCAGCTTCGACCCCC
TTAATTCAGGGCACGTCCCCTGCGCCTTTCTTCCGGGGAGAATGAAAGCGAAACCTCACG
GGTTTGTGGTCATCCCCGCCGCTCCCGACAGATCGCTGGCCTGCTGGGGGTCCTCTGGCT
GGGCCGCCTCTGGGTGAGCGGTGGGGGCCGGGACTCAGGAGGGCCTGGTCCGGCAAGCTG
CCCTGTCACGGCGGAGTGGATGATGTCACACTCCTCTGTGACATGCTAGGCTCCTTCGTT
ACTTTGAAGCCAACAGCAGAGGCGGGAGAGTGGAGGCTGTGTCCCACAGACGCTAGCATC
ATGAATATATTTGATCGGAAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGCTGGCTAAGGGCCTTTTTTGGCCGGAATTGCTTCCCCCTTAGTCCGCGTCTTTC
CTCCTCCTCCGCCAAGTGTAGACTCGGAGGCTCTTTGGCCCAGGCCCAGCTTCGACCCCC
TTAATTCAGGGCACGTCCCCTGCGCCTTTCTTCCGGGGAGAATGAAAGCGAAACCTCACG
GGTTTGTGGTCATCCCCGCCGCTCCCGACAGATCGCTGGCCTGCTGGGGGTCCTCTGGCT
GGGCCGCCTCTGGGTGAGCGGTGGGGGCCGGGACTCAGGAGGGCCTGGTCCGGCAAGCTG
CCCTGTCACGGCGGAGTGGATGATGTCACACTCCTCTGTGACATGCTAGGCTCCTTCGTT
ACTTTGAAGCCAACAGCAGAGGCGGGAGAGTGGAGGCTGTGTCCCACAGACGCTAGCATC
ATGAATATATTTGATCGGAAGATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               185-299, + strand, RNAz p=0.990697
               

               
               263-358, - strand, RNAz p=0.711422

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-299, + strand, RNAz p=0.990697
               

               
               263-358, - strand, RNAz p=0.711422

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               192-269, + strand, RNAmicro p=0.995638

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               192-269, + strand, RNAmicro p=0.995638

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               145-388, gnl|bosTau2|chr5 (21646569-21646326)
               

               
               145-388, gnl|canFam2|chr27 (7953405-7952818)
               

               
               145-388, gnl|dasNov1|scaffold_11549 (47773-48277)
               

               
               145-388, gnl|echTel1|scaffold_325415 (42713-43235)
               

               
               145-388, gnl|hg17|chr12 (48421829-48422290)
               

               
               145-388, gnl|loxAfr1|scaffold_132006 (4-506)
               

               
               145-388, gnl|mm7|chr15 (99378441-99378899)
               

               
               145-388, gnl|Mm7|chr15 (99378617-99378859)
               

               
               145-388, gnl|monDom2|scaffold_181 (662496-663001)
               

               
               145-388, gnl|panTro1|chr10_random (20241659-20241198)
               

               
               145-388, gnl|rheMac2|chr11 (46871618-46872084)
               

               
               145-388, gnl|rn3|chr7 (138216083-138216537)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-388, gnl|bosTau2|chr5 (21646569-21646326)
               

               
               145-388, gnl|canFam2|chr27 (7953405-7952818)
               

               
               145-388, gnl|dasNov1|scaffold_11549 (47773-48277)
               

               
               145-388, gnl|echTel1|scaffold_325415 (42713-43235)
               

               
               145-388, gnl|hg17|chr12 (48421829-48422290)
               

               
               145-388, gnl|loxAfr1|scaffold_132006 (4-506)
               

               
               145-388, gnl|mm7|chr15 (99378441-99378899)
               

               
               145-388, gnl|Mm7|chr15 (99378617-99378859)
               

               
               145-388, gnl|monDom2|scaffold_181 (662496-663001)
               

               
               145-388, gnl|panTro1|chr10_random (20241659-20241198)
               

               
               145-388, gnl|rheMac2|chr11 (46871618-46872084)
               

               
               145-388, gnl|rn3|chr7 (138216083-138216537)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               clu (0.119646)

	185-299, + strand, RNAz p=0.990697
	263-358, - strand, RNAz p=0.711422

	145-388, gnl\|bosTau2\|chr5 (21646569-21646326)
	145-388, gnl\|canFam2\|chr27 (7953405-7952818)
	145-388, gnl\|dasNov1\|scaffold_11549 (47773-48277)
	145-388, gnl\|echTel1\|scaffold_325415 (42713-43235)
	145-388, gnl\|hg17\|chr12 (48421829-48422290)
	145-388, gnl\|loxAfr1\|scaffold_132006 (4-506)
	145-388, gnl\|mm7\|chr15 (99378441-99378899)
	145-388, gnl\|Mm7\|chr15 (99378617-99378859)
	145-388, gnl\|monDom2\|scaffold_181 (662496-663001)
	145-388, gnl\|panTro1\|chr10_random (20241659-20241198)
	145-388, gnl\|rheMac2\|chr11 (46871618-46872084)
	145-388, gnl\|rn3\|chr7 (138216083-138216537)