Non-Coding RNA Search

Ss1.1-Pig1-23F11.3

Sequence:


               
               GTCCAACGAAGAGTTCAAGACATACAACTATCCCAAGTACCGAGCCGAGGCCCTTTTGAG
CCATGCACCCCGACTTGACAGCGACGGGGCTGACCTCCTCACCAAGCTGCTGCAGTTTGA
AGGTCGCAACCGGATCTCCGCAGAGGATGCCATGAAACATCCATTCTTCCTCAGTCTGGG
GGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACTAAAGGAGATCCAGCT
ACAAAAGGAGGCCAGCCTTCGGTCTTCATCAATGCCTGACTCAGGCAGGCCAGCTTTCCG
AGTGGTGGACACCGAGTTCTAAGCCGAGTTCTAAGCCACAGACCGAGGCCCCAGCAGGCA
GCAGCTGGAGGGATGCCATACCCCTCACAGGGCAGCCCCCAACTGCATCCTCCTTGCTTG
CTGCCTACCTACCCGCCTGACTCATGCTCACCTGCCCACATGTCCCCTGCTGCCTGTCCA
GACACCCGACCATTGGCCTGTTGGCCCACCCATTGGCCTGTCTGCTGGGTGCTAACAAAG
CTCTCATCGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAACGAAGAGTTCAAGACATACAACTATCCCAAGTACCGAGCCGAGGCCCTTTTGAG
CCATGCACCCCGACTTGACAGCGACGGGGCTGACCTCCTCACCAAGCTGCTGCAGTTTGA
AGGTCGCAACCGGATCTCCGCAGAGGATGCCATGAAACATCCATTCTTCCTCAGTCTGGG
GGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACTAAAGGAGATCCAGCT
ACAAAAGGAGGCCAGCCTTCGGTCTTCATCAATGCCTGACTCAGGCAGGCCAGCTTTCCG
AGTGGTGGACACCGAGTTCTAAGCCGAGTTCTAAGCCACAGACCGAGGCCCCAGCAGGCA
GCAGCTGGAGGGATGCCATACCCCTCACAGGGCAGCCCCCAACTGCATCCTCCTTGCTTG
CTGCCTACCTACCCGCCTGACTCATGCTCACCTGCCCACATGTCCCCTGCTGCCTGTCCA
GACACCCGACCATTGGCCTGTTGGCCCACCCATTGGCCTGTCTGCTGGGTGCTAACAAAG
CTCTCATCGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               321-475, - strand, RNAz p=0.927581

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-475, - strand, RNAz p=0.927581

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               350-435, + strand, RNAmicro p=0.967903

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               350-435, + strand, RNAmicro p=0.967903

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               282-552, gnl|bosTau2|chr27 (15997385-15997643)
               

               
               282-552, gnl|Hg17|chrX (46844381-46844639)
               

               
               282-552, gnl|Mm7|chrX (19131756-19132036)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               282-552, gnl|bosTau2|chr27 (15997385-15997643)
               

               
               282-552, gnl|Hg17|chrX (46844381-46844639)
               

               
               282-552, gnl|Mm7|chrX (19131756-19132036)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ton (0.1755)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fbs (0.175346)

	282-552, gnl\|bosTau2\|chr27 (15997385-15997643)
	282-552, gnl\|Hg17\|chrX (46844381-46844639)
	282-552, gnl\|Mm7\|chrX (19131756-19132036)