Non-Coding RNA Search

Ss1.1-Pig1-24E15.5

Sequence:


               
               GAAGCCTGTAACCTGGAAGTGATTCTGGGCTTTGACGGATCCAGGGATCAGAACATATTC
GTGGCTCAGAAGGGCTTCGAGTCCAAAGTGGACACCATCCTGAACAGAATCAGCCAGATG
CAAAGAATCAGCTGCAGCGGCACCCAGATGCCCACGGTGCGGGTGTCCGTGGTGGCCACC
ACGCCCGCGGGCCCCGTGGAGGCCTTTGACTTTGCCGAGTACCAGCCGGAGATGTTCGAG
AAGATCCTGGGCATGCGCACCCAGCACCCCTACGTCCTCACTGCCGACACGCTGAAGCTC
TACCAGAACAAGTTCCGGCAGGGCTCGCCCGGCAGCGTGAAGGTGGTCATTCATTTTACT
GACGGGGCGGACGGAGACCTGGCAGACTTACAAAGAGCGTCTGAGGCCCTCCGACAGGAA
GGTGTCCAAGCTCTGATCCTCGTGGGCCTGGAACGTGTACCCAACTTGGAGCAGCTGATG
CAGCTGGAGTTTGGGCGAGGGTTCACGTACAACCGGCCCCTGAGGCTGAACTTGCTGGAC
CTGGATTACGAACTAGCAGAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCTGTAACCTGGAAGTGATTCTGGGCTTTGACGGATCCAGGGATCAGAACATATTC
GTGGCTCAGAAGGGCTTCGAGTCCAAAGTGGACACCATCCTGAACAGAATCAGCCAGATG
CAAAGAATCAGCTGCAGCGGCACCCAGATGCCCACGGTGCGGGTGTCCGTGGTGGCCACC
ACGCCCGCGGGCCCCGTGGAGGCCTTTGACTTTGCCGAGTACCAGCCGGAGATGTTCGAG
AAGATCCTGGGCATGCGCACCCAGCACCCCTACGTCCTCACTGCCGACACGCTGAAGCTC
TACCAGAACAAGTTCCGGCAGGGCTCGCCCGGCAGCGTGAAGGTGGTCATTCATTTTACT
GACGGGGCGGACGGAGACCTGGCAGACTTACAAAGAGCGTCTGAGGCCCTCCGACAGGAA
GGTGTCCAAGCTCTGATCCTCGTGGGCCTGGAACGTGTACCCAACTTGGAGCAGCTGATG
CAGCTGGAGTTTGGGCGAGGGTTCACGTACAACCGGCCCCTGAGGCTGAACTTGCTGGAC
CTGGATTACGAACTAGCAGAGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11066222|gb|AAG28506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11066222|gb|AAG28506.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-122, + strand, RNAz p=0.774533

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-122, + strand, RNAz p=0.774533

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB209636, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209636, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               3-344, gnl|bosTau2|chr3 (83881573-83881232)
               

               
               3-344, gnl|Hg17|chr2 (238056680-238056339)
               

               
               3-344, gnl|Mm7|chr1 (90705561-90705220)
               


               
               420-563, gnl|bosTau2|chr3 (83878732-83878589)
               

               
               420-563, gnl|canFam2|chr25 (51033040-51033208)
               

               
               420-563, gnl|danRer3|chr16 (20276110-20275948)
               

               
               420-563, gnl|dasNov1|scaffold_2040 (46541-46709)
               

               
               420-563, gnl|echTel1|scaffold_114620 (518-687)
               

               
               420-563, gnl|fr1|chrUn (228854706-228854539)
               

               
               420-563, gnl|galGal2|chr7 (4760441-4760272)
               

               
               420-563, gnl|hg17|chr2 (238053886-238054055)
               

               
               420-563, gnl|Hg17|chr2 (238054043-238053900)
               

               
               420-563, gnl|loxAfr1|scaffold_12620 (11963-11794)
               

               
               420-563, gnl|mm7|chr1 (90702055-90702223)
               

               
               420-563, gnl|Mm7|chr1 (90702211-90702068)
               

               
               420-563, gnl|monDom2|scaffold_161 (61056-60889)
               

               
               420-563, gnl|panTro1|chr13 (128993936-128994105)
               

               
               420-563, gnl|rheMac2|chr12 (101219441-101219610)
               

               
               420-563, gnl|rn3|chr9 (90201359-90201527)
               

               
               420-563, gnl|tetNig1|chr2 (18601489-18601322)
               

               
               420-563, gnl|xenTro1|scaffold_49 (2403171-2403353)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-344, gnl|bosTau2|chr3 (83881573-83881232)
               

               
               3-344, gnl|Hg17|chr2 (238056680-238056339)
               

               
               3-344, gnl|Mm7|chr1 (90705561-90705220)
               


               
               420-563, gnl|bosTau2|chr3 (83878732-83878589)
               

               
               420-563, gnl|canFam2|chr25 (51033040-51033208)
               

               
               420-563, gnl|danRer3|chr16 (20276110-20275948)
               

               
               420-563, gnl|dasNov1|scaffold_2040 (46541-46709)
               

               
               420-563, gnl|echTel1|scaffold_114620 (518-687)
               

               
               420-563, gnl|fr1|chrUn (228854706-228854539)
               

               
               420-563, gnl|galGal2|chr7 (4760441-4760272)
               

               
               420-563, gnl|hg17|chr2 (238053886-238054055)
               

               
               420-563, gnl|Hg17|chr2 (238054043-238053900)
               

               
               420-563, gnl|loxAfr1|scaffold_12620 (11963-11794)
               

               
               420-563, gnl|mm7|chr1 (90702055-90702223)
               

               
               420-563, gnl|Mm7|chr1 (90702211-90702068)
               

               
               420-563, gnl|monDom2|scaffold_161 (61056-60889)
               

               
               420-563, gnl|panTro1|chr13 (128993936-128994105)
               

               
               420-563, gnl|rheMac2|chr12 (101219441-101219610)
               

               
               420-563, gnl|rn3|chr9 (90201359-90201527)
               

               
               420-563, gnl|tetNig1|chr2 (18601489-18601322)
               

               
               420-563, gnl|xenTro1|scaffold_49 (2403171-2403353)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	3-344, gnl\|bosTau2\|chr3 (83881573-83881232)
	3-344, gnl\|Hg17\|chr2 (238056680-238056339)
	3-344, gnl\|Mm7\|chr1 (90705561-90705220)

	420-563, gnl\|bosTau2\|chr3 (83878732-83878589)
	420-563, gnl\|canFam2\|chr25 (51033040-51033208)
	420-563, gnl\|danRer3\|chr16 (20276110-20275948)
	420-563, gnl\|dasNov1\|scaffold_2040 (46541-46709)
	420-563, gnl\|echTel1\|scaffold_114620 (518-687)
	420-563, gnl\|fr1\|chrUn (228854706-228854539)
	420-563, gnl\|galGal2\|chr7 (4760441-4760272)
	420-563, gnl\|hg17\|chr2 (238053886-238054055)
	420-563, gnl\|Hg17\|chr2 (238054043-238053900)
	420-563, gnl\|loxAfr1\|scaffold_12620 (11963-11794)
	420-563, gnl\|mm7\|chr1 (90702055-90702223)
	420-563, gnl\|Mm7\|chr1 (90702211-90702068)
	420-563, gnl\|monDom2\|scaffold_161 (61056-60889)
	420-563, gnl\|panTro1\|chr13 (128993936-128994105)
	420-563, gnl\|rheMac2\|chr12 (101219441-101219610)
	420-563, gnl\|rn3\|chr9 (90201359-90201527)
	420-563, gnl\|tetNig1\|chr2 (18601489-18601322)
	420-563, gnl\|xenTro1\|scaffold_49 (2403171-2403353)