Non-Coding RNA Search

Ss1.1-Pig1-28O06.5

Sequence:


               
               TCATTTAGAAAATACTTAGCTTTATCTTTCAGTCTTTTAATAGATGAGGTCTTGACCTCA
TTTAAACCTCTGTCAGTATGCTTAATAAAAGAATGATTCAAGTATGGAAGAGGAAACTTT
TGAAGTAATAAAATTTTTCCCCTTCTAGGGAGGAAACAGACTTTTTAGTGATGTTTTTAA
AATGTCATTAGAAATTTTGCTCAATAGTGTATTACTTAAGTCCACCTCTGTATAATACAT
TATTCTGTTTTTACTTAAAACAATCCATAACCATTTCAGATAGTTCTCTAGTAAATTGTT
TTAAAAGCCACCAACAGATTCTAAGGTTTTATAGTTTGAAAGCCAAGCTAAATGTCACCA
GTTGTAAATTAGACTATAACATGAGCCTCTGACTTTCATGTGATAGTGACATATATGAAA
AGAAAAATATGATAACTGTGTCTGCCTTCCTGGTTTTCCTTGCTTTCAACATATGTATGT
TAGAATTTTAGGTAGTCTAAAAATCCATATTTAGAATCTTACCTGTTTCTATAATAATAA
AATTACCAAAGTAGTGATAGAATTGAAGTAGCACGAAGATTGTTTGTTTTAGCATCAAAA
AAGTGAATCAGTGTTGAAATGAATTTTTGTGTGTGCCAGATTAAAGAGTGTACCAGTGAC
AAGAAGAGTCTAAAAATAAAAATGTAATTACAGTGCTTGCAGTTCAATATGTTCTGAAAG
ACAATCTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTTAGAAAATACTTAGCTTTATCTTTCAGTCTTTTAATAGATGAGGTCTTGACCTCA
TTTAAACCTCTGTCAGTATGCTTAATAAAAGAATGATTCAAGTATGGAAGAGGAAACTTT
TGAAGTAATAAAATTTTTCCCCTTCTAGGGAGGAAACAGACTTTTTAGTGATGTTTTTAA
AATGTCATTAGAAATTTTGCTCAATAGTGTATTACTTAAGTCCACCTCTGTATAATACAT
TATTCTGTTTTTACTTAAAACAATCCATAACCATTTCAGATAGTTCTCTAGTAAATTGTT
TTAAAAGCCACCAACAGATTCTAAGGTTTTATAGTTTGAAAGCCAAGCTAAATGTCACCA
GTTGTAAATTAGACTATAACATGAGCCTCTGACTTTCATGTGATAGTGACATATATGAAA
AGAAAAATATGATAACTGTGTCTGCCTTCCTGGTTTTCCTTGCTTTCAACATATGTATGT
TAGAATTTTAGGTAGTCTAAAAATCCATATTTAGAATCTTACCTGTTTCTATAATAATAA
AATTACCAAAGTAGTGATAGAATTGAAGTAGCACGAAGATTGTTTGTTTTAGCATCAAAA
AAGTGAATCAGTGTTGAAATGAATTTTTGTGTGTGCCAGATTAAAGAGTGTACCAGTGAC
AAGAAGAGTCTAAAAATAAAAATGTAATTACAGTGCTTGCAGTTCAATATGTTCTGAAAG
ACAATCTTTAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               57-148, - strand, RNAz p=0.989898
               

               
               84-193, + strand, RNAz p=0.999947

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-148, - strand, RNAz p=0.989898
               

               
               84-193, + strand, RNAz p=0.999947

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-732, gnl|bosTau2|chr17 (9598364-9599089)
               

               
               5-732, gnl|canFam2|chr19 (5297087-5296078)
               

               
               5-732, gnl|dasNov1|scaffold_928 (10790-11768)
               

               
               5-732, gnl|echTel1|scaffold_311616 (106165-105167)
               

               
               5-732, gnl|hg17|chr4 (141830787-141831787)
               

               
               5-732, gnl|Hg17|chr4 (141830922-141831640)
               

               
               5-732, gnl|loxAfr1|scaffold_8504 (33422-32394)
               

               
               5-732, gnl|mm7|chr8 (81883637-81882676)
               

               
               5-732, gnl|Mm7|chr8 (81883481-81882813)
               

               
               5-732, gnl|monDom2|scaffold_9 (8483633-8484661)
               

               
               5-732, gnl|oryCun1|scaffold_181326 (2314-3312)
               

               
               5-732, gnl|panTro1|chr3 (159091766-159092766)
               

               
               5-732, gnl|rheMac2|chr5 (133005052-133006058)
               

               
               5-732, gnl|rn3|chr19 (26526972-26527992)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-732, gnl|bosTau2|chr17 (9598364-9599089)
               

               
               5-732, gnl|canFam2|chr19 (5297087-5296078)
               

               
               5-732, gnl|dasNov1|scaffold_928 (10790-11768)
               

               
               5-732, gnl|echTel1|scaffold_311616 (106165-105167)
               

               
               5-732, gnl|hg17|chr4 (141830787-141831787)
               

               
               5-732, gnl|Hg17|chr4 (141830922-141831640)
               

               
               5-732, gnl|loxAfr1|scaffold_8504 (33422-32394)
               

               
               5-732, gnl|mm7|chr8 (81883637-81882676)
               

               
               5-732, gnl|Mm7|chr8 (81883481-81882813)
               

               
               5-732, gnl|monDom2|scaffold_9 (8483633-8484661)
               

               
               5-732, gnl|oryCun1|scaffold_181326 (2314-3312)
               

               
               5-732, gnl|panTro1|chr3 (159091766-159092766)
               

               
               5-732, gnl|rheMac2|chr5 (133005052-133006058)
               

               
               5-732, gnl|rn3|chr19 (26526972-26527992)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	57-148, - strand, RNAz p=0.989898
	84-193, + strand, RNAz p=0.999947

	5-732, gnl\|bosTau2\|chr17 (9598364-9599089)
	5-732, gnl\|canFam2\|chr19 (5297087-5296078)
	5-732, gnl\|dasNov1\|scaffold_928 (10790-11768)
	5-732, gnl\|echTel1\|scaffold_311616 (106165-105167)
	5-732, gnl\|hg17\|chr4 (141830787-141831787)
	5-732, gnl\|Hg17\|chr4 (141830922-141831640)
	5-732, gnl\|loxAfr1\|scaffold_8504 (33422-32394)
	5-732, gnl\|mm7\|chr8 (81883637-81882676)
	5-732, gnl\|Mm7\|chr8 (81883481-81882813)
	5-732, gnl\|monDom2\|scaffold_9 (8483633-8484661)
	5-732, gnl\|oryCun1\|scaffold_181326 (2314-3312)
	5-732, gnl\|panTro1\|chr3 (159091766-159092766)
	5-732, gnl\|rheMac2\|chr5 (133005052-133006058)
	5-732, gnl\|rn3\|chr19 (26526972-26527992)