Non-Coding RNA Search

Ss1.1-Pig1-30B04.5

Sequence:


               
               TGAAGATGGGACTAGGCTGGTGGGGGAAGATGCTCCTAAAAATAAGGATCTAGTTGAATG
GCTGAAGCTGCATCCCACTTACACTGTTGATATGCCAAGTTATGTACCAAAGAATGCAGA
TGTGCTGTTTTCCTCATTTCAGAAACCGAAACAAAAACGACACAGATGTCGAAACCCTAA
TAAATTGGATATAAACACTTTGACGGGAGAAGAAAGGGTGCCTGTGGTCAATAAACGAAA
TGGGAAGAAGATGGGTGGAGCTATGGCGCCTCCGATGAAGGATCTACCCCGGTGGCTGGA
AGAAAACCCCGAGTTTGCGGTTGCCCCAGATTGGACTGATATAGTCAAGCAGTCTGGTTT
TGTTCCTGAGTCAATGTTTGACCGGCTTCTCACTGGACCCGTGGTGAGGGGAGAGGGAGC
CAGCAGGAGAGGACGGAGGCCCAAGAGCGAAATCGCCAGGGCAGCCGCCGCTGCCGCGGC
CGTGGCTTCCACGTCGGGGATCAACCCTCTGCTGGTGAACAGCCTGTTCGCTGGAATGGA
CCTGACGAGCCTGCAGAACCTCCAGAATCTCCAGTCTCTCCAGCTGGCGGGTCTCATGGG
CTTCCCGCCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGATGGGACTAGGCTGGTGGGGGAAGATGCTCCTAAAAATAAGGATCTAGTTGAATG
GCTGAAGCTGCATCCCACTTACACTGTTGATATGCCAAGTTATGTACCAAAGAATGCAGA
TGTGCTGTTTTCCTCATTTCAGAAACCGAAACAAAAACGACACAGATGTCGAAACCCTAA
TAAATTGGATATAAACACTTTGACGGGAGAAGAAAGGGTGCCTGTGGTCAATAAACGAAA
TGGGAAGAAGATGGGTGGAGCTATGGCGCCTCCGATGAAGGATCTACCCCGGTGGCTGGA
AGAAAACCCCGAGTTTGCGGTTGCCCCAGATTGGACTGATATAGTCAAGCAGTCTGGTTT
TGTTCCTGAGTCAATGTTTGACCGGCTTCTCACTGGACCCGTGGTGAGGGGAGAGGGAGC
CAGCAGGAGAGGACGGAGGCCCAAGAGCGAAATCGCCAGGGCAGCCGCCGCTGCCGCGGC
CGTGGCTTCCACGTCGGGGATCAACCCTCTGCTGGTGAACAGCCTGTTCGCTGGAATGGA
CCTGACGAGCCTGCAGAACCTCCAGAATCTCCAGTCTCTCCAGCTGGCGGGTCTCATGGG
CTTCCCGCCGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6JDN4_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6JDN4_CANFA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               132-250, + strand, RNAz p=0.85291
               

               
               435-554, + strand, RNAz p=0.543719

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-250, + strand, RNAz p=0.85291
               

               
               435-554, + strand, RNAz p=0.543719

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               411-540, - strand, RNAmicro p=0.940556

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               411-540, - strand, RNAmicro p=0.940556

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               99-250, gnl|bosTau2|chr14 (14894277-14894126)
               

               
               99-250, gnl|Hg17|chr8 (61937299-61937449)
               

               
               99-250, gnl|Mm7|chr4 (8791045-8791196)
               


               
               356-612, gnl|bosTau2|chr14 (14892395-14892139)
               

               
               356-612, gnl|Hg17|chr8 (61940129-61940385)
               

               
               356-612, gnl|Mm7|chr4 (8792885-8793141)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-250, gnl|bosTau2|chr14 (14894277-14894126)
               

               
               99-250, gnl|Hg17|chr8 (61937299-61937449)
               

               
               99-250, gnl|Mm7|chr4 (8791045-8791196)
               


               
               356-612, gnl|bosTau2|chr14 (14892395-14892139)
               

               
               356-612, gnl|Hg17|chr8 (61940129-61940385)
               

               
               356-612, gnl|Mm7|chr4 (8792885-8793141)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cga (0.279096)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               pla (0.133672)

	132-250, + strand, RNAz p=0.85291
	435-554, + strand, RNAz p=0.543719

	99-250, gnl\|bosTau2\|chr14 (14894277-14894126)
	99-250, gnl\|Hg17\|chr8 (61937299-61937449)
	99-250, gnl\|Mm7\|chr4 (8791045-8791196)

	356-612, gnl\|bosTau2\|chr14 (14892395-14892139)
	356-612, gnl\|Hg17\|chr8 (61940129-61940385)
	356-612, gnl\|Mm7\|chr4 (8792885-8793141)