Non-Coding RNA Search

Ss1.1-Pig1-34C06.5

Sequence:


               
               GGGCAGCTGCTATCTTTGAGACAGAAAGATGCAGGACAGCATTTCATATGTACCCATTCG
AATGTTTTGGCTGTTTTTAGATTTCCGAACCCTTGTGGGGGTGGGGGTGCCTGGGTTGTG
GGGTAAGAGCTTCCATCTGTCCGGTAGATAGTGAGGCAGGGGCAGTGGGGCACAGTCGTT
GCTGACAAGTGTGCAAGAGCCAGCCCCCTGTCTGTTCCTGGGTGCTGACTCAGAGGGGCT
GTCGTCTGGGAGCCTGTGCCCCTGGGTCCCCGAGGGTCATGGCTCCTCCCCCACCAGTCC
CTTCTGGCTGAGGCCTCCCCCTCTGCCCTCACCCCCTTCCCCCACCCTGGCCAGGCCCCG
GGCCCCCTCTTAACCCTGCCCGCGGATCATTTCAGGAAACCTGTTTACTGTGTAGCACCC
AGGCAAAACATGCTCCACAAACCCAACTTGTATATTTGGCAAATTAAACTTGACATTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGCTGCTATCTTTGAGACAGAAAGATGCAGGACAGCATTTCATATGTACCCATTCG
AATGTTTTGGCTGTTTTTAGATTTCCGAACCCTTGTGGGGGTGGGGGTGCCTGGGTTGTG
GGGTAAGAGCTTCCATCTGTCCGGTAGATAGTGAGGCAGGGGCAGTGGGGCACAGTCGTT
GCTGACAAGTGTGCAAGAGCCAGCCCCCTGTCTGTTCCTGGGTGCTGACTCAGAGGGGCT
GTCGTCTGGGAGCCTGTGCCCCTGGGTCCCCGAGGGTCATGGCTCCTCCCCCACCAGTCC
CTTCTGGCTGAGGCCTCCCCCTCTGCCCTCACCCCCTTCCCCCACCCTGGCCAGGCCCCG
GGCCCCCTCTTAACCCTGCCCGCGGATCATTTCAGGAAACCTGTTTACTGTGTAGCACCC
AGGCAAAACATGCTCCACAAACCCAACTTGTATATTTGGCAAATTAAACTTGACATTATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.698947
               

               
               216-401, - strand, RNAz p=0.965287

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.698947
               

               
               216-401, - strand, RNAz p=0.965287

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr25 (34915440-34914940)
               

               
               1-480, gnl|Hg17|chr7 (98638767-98638263)
               

               
               1-480, gnl|Mm7|chr5 (144158773-144158298)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr25 (34915440-34914940)
               

               
               1-480, gnl|Hg17|chr7 (98638767-98638263)
               

               
               1-480, gnl|Mm7|chr5 (144158773-144158298)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)

	1-118, - strand, RNAz p=0.698947
	216-401, - strand, RNAz p=0.965287

	1-480, gnl\|bosTau2\|chr25 (34915440-34914940)
	1-480, gnl\|Hg17\|chr7 (98638767-98638263)
	1-480, gnl\|Mm7\|chr5 (144158773-144158298)

	elu (0.385356)
	nep (0.36785)
	ece (0.229305)
	mcp (0.170648)
	eye (0.170503)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)