Non-Coding RNA Search

Ss1.1-Pig1-34D18.5

Sequence:


               
               GTTTTTTTTGTTTTTCAGTGACATTTACAGCTGTAACGTCTAAACTTAATTGATTGTGAG
GTTTTACTTCTGAAATTTTTCTATAATAATTTAAAGGATGAAATACTGGAGCTGTTGTAG
AAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAGGAGGGCTGTACGACAGGGAAACA
CACATGGACTAAAAAGGATGCTGGGAAAAAGGTGGTTCCATGTAGACACGACTGGCATCA
GACTGGGGGTGAAGTCACCATTTCAGTATATGCTAAAAATTCACTTCCAGAACTTAGTCA
GGTAGTGGCAAATAGTACGTTGGTAAGTACACTAAATATCTTTGAGTGAAAATTGTCTTT
ATACATTATTCTTTACATTAATGTATTACAAAATATTGATCTTCTTTGAGCTGTTTTTAA
GATCTTTTCATCTTTCATTTCAAAAAGATCGTTTCATCCTCCCCATTTGAAACTATTTTA
AATGAAAGTTTCTGCATAGTAAAGTTATATCTGAAGTGTTCTGGAGATATAGTAGCTAAA
TGATTTATCAAATAGTAATGATACTTCGTTCTCAATATGAAATTCCAAGTTAATTTTTCT
TGAGGTGGGGTCAAGATGGTGGAGGAGTAAGATGTGGGGCTCACTTTCTCCTACAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTGTTTTTCAGTGACATTTACAGCTGTAACGTCTAAACTTAATTGATTGTGAG
GTTTTACTTCTGAAATTTTTCTATAATAATTTAAAGGATGAAATACTGGAGCTGTTGTAG
AAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAGGAGGGCTGTACGACAGGGAAACA
CACATGGACTAAAAAGGATGCTGGGAAAAAGGTGGTTCCATGTAGACACGACTGGCATCA
GACTGGGGGTGAAGTCACCATTTCAGTATATGCTAAAAATTCACTTCCAGAACTTAGTCA
GGTAGTGGCAAATAGTACGTTGGTAAGTACACTAAATATCTTTGAGTGAAAATTGTCTTT
ATACATTATTCTTTACATTAATGTATTACAAAATATTGATCTTCTTTGAGCTGTTTTTAA
GATCTTTTCATCTTTCATTTCAAAAAGATCGTTTCATCCTCCCCATTTGAAACTATTTTA
AATGAAAGTTTCTGCATAGTAAAGTTATATCTGAAGTGTTCTGGAGATATAGTAGCTAAA
TGATTTATCAAATAGTAATGATACTTCGTTCTCAATATGAAATTCCAAGTTAATTTTTCT
TGAGGTGGGGTCAAGATGGTGGAGGAGTAAGATGTGGGGCTCACTTTCTCCTACAAATAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41190389|ref|XP_371490.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41190389|ref|XP_371490.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               48-203, + strand, RNAz p=0.634109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-203, + strand, RNAz p=0.634109

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC072461, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC072461, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-203, gnl|bosTau2|chr29 (2209751-2209559)
               

               
               11-203, gnl|Hg17|chr11 (89578470-89578275)
               

               
               11-203, gnl|Mm7|chr9 (18162038-18162203)
               


               
               378-601, gnl|bosTau2|chr29 (2207447-2207223)
               

               
               378-601, gnl|Hg17|chr11 (89576073-89575848)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-203, gnl|bosTau2|chr29 (2209751-2209559)
               

               
               11-203, gnl|Hg17|chr11 (89578470-89578275)
               

               
               11-203, gnl|Mm7|chr9 (18162038-18162203)
               


               
               378-601, gnl|bosTau2|chr29 (2207447-2207223)
               

               
               378-601, gnl|Hg17|chr11 (89576073-89575848)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sag (0.182715)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	11-203, gnl\|bosTau2\|chr29 (2209751-2209559)
	11-203, gnl\|Hg17\|chr11 (89578470-89578275)
	11-203, gnl\|Mm7\|chr9 (18162038-18162203)

	378-601, gnl\|bosTau2\|chr29 (2207447-2207223)
	378-601, gnl\|Hg17\|chr11 (89576073-89575848)