Non-Coding RNA Search

Ss1.1-Pig1-34F09.5

Sequence:


               
               GCCTTGGTCCTAGCTTGGCTTTCTACCTATGTAGCAGACAGCGGTAGCAACCAGCTCCTG
GGCACTATTGTGTCAGCTGGCGACACATCCGTCCTCCACCTGGGGCATGTGGACCATCTG
GTGGCAGGCCAAGGCACCCCCGAGCCAACCGAACTCCCCCATCCATCAGAGGGTAGTGAT
GAGAAGGCTGAAGAGGCTGGCGAAGGTGGGGGAGACTCCACAGGGGAGCCTGGAGCTGGG
GGTGGTGTTGAACCCAGCCTCGAGCATCTGCTTGACATCCAAGGCCTGCCCAAAAGACAC
GCAGGCCCAGAGAACGGCAGGCCAGAGGCGCCCCTGCGATCCGAGGAGAGCAGCTGCCTC
CCTTCCGGCCCCAGCCTCATCAATGTGCGGCTCAAATTCCTCAATGACACCGAGGAGCTG
GCTGTGGCCAGGCCAGAGGATACTGTGGGTGCTCTGAAGAGTAAATACTTCCCTGGACAA
GAGAGCCAGATGAAGCTCATCTACCAGGGCCGCCTGCTGCAGGACCCGGGCCGCACGCTG
CGTTCCCTGAACATCACGGACAACTGTGTGATTCACTGCCACCGCTCGCCCCCGGGGTCA
GCTGCTCCAGGCCCCGCCGCCGCCCTGGCCCCCTCCTCGGCCACTGAGCCACCGGGCCTG
GGCGTCAGTGTGGGCAGCCTCATGGTGCCTGTGTTCGTGGTGCTGCTGGGTGTGGTCTGG
TACTTCCGCATCAATTACCGCCAGTTCTTCACAGCACCTGCCACTGTCTCCCTGGTGGGG
GTCACTGTCTTCTTCAGCTTCCTAGTATTTGGGATGTACGGACGATAAGGACCGTGGGGA
GAAGACGCAAGGCCTGGTCTTCCTCCTTTATGGCCTCCCCCCTTTCCTGGCCAGGGCTGG
GCCCAAGGGCCTGGGAGGGAAGGGTGGGAAGGATGCGGTGGGTCTTCGTCCACAGGACAC
GAGAGGCAGGTGTGGGGGCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTGGTCCTAGCTTGGCTTTCTACCTATGTAGCAGACAGCGGTAGCAACCAGCTCCTG
GGCACTATTGTGTCAGCTGGCGACACATCCGTCCTCCACCTGGGGCATGTGGACCATCTG
GTGGCAGGCCAAGGCACCCCCGAGCCAACCGAACTCCCCCATCCATCAGAGGGTAGTGAT
GAGAAGGCTGAAGAGGCTGGCGAAGGTGGGGGAGACTCCACAGGGGAGCCTGGAGCTGGG
GGTGGTGTTGAACCCAGCCTCGAGCATCTGCTTGACATCCAAGGCCTGCCCAAAAGACAC
GCAGGCCCAGAGAACGGCAGGCCAGAGGCGCCCCTGCGATCCGAGGAGAGCAGCTGCCTC
CCTTCCGGCCCCAGCCTCATCAATGTGCGGCTCAAATTCCTCAATGACACCGAGGAGCTG
GCTGTGGCCAGGCCAGAGGATACTGTGGGTGCTCTGAAGAGTAAATACTTCCCTGGACAA
GAGAGCCAGATGAAGCTCATCTACCAGGGCCGCCTGCTGCAGGACCCGGGCCGCACGCTG
CGTTCCCTGAACATCACGGACAACTGTGTGATTCACTGCCACCGCTCGCCCCCGGGGTCA
GCTGCTCCAGGCCCCGCCGCCGCCCTGGCCCCCTCCTCGGCCACTGAGCCACCGGGCCTG
GGCGTCAGTGTGGGCAGCCTCATGGTGCCTGTGTTCGTGGTGCTGCTGGGTGTGGTCTGG
TACTTCCGCATCAATTACCGCCAGTTCTTCACAGCACCTGCCACTGTCTCCCTGGTGGGG
GTCACTGTCTTCTTCAGCTTCCTAGTATTTGGGATGTACGGACGATAAGGACCGTGGGGA
GAAGACGCAAGGCCTGGTCTTCCTCCTTTATGGCCTCCCCCCTTTCCTGGCCAGGGCTGG
GCCCAAGGGCCTGGGAGGGAAGGGTGGGAAGGATGCGGTGGGTCTTCGTCCACAGGACAC
GAGAGGCAGGTGTGGGGGCCTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q71RG4_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q71RG4_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               659-970, + strand, RNAz p=0.955949
               

               
               817-970, - strand, RNAz p=0.998952

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               659-970, + strand, RNAz p=0.955949
               

               
               817-970, - strand, RNAz p=0.998952

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               5' of BC063489, +
               

               
               3' of NM_024107, +

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC063489, +
               

               
               3' of NM_024107, +

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               460-970, gnl|bosTau2|chr19 (38105100-38104590)
               

               
               460-970, gnl|canFam2|chr9 (22525550-22525165)
               

               
               460-970, gnl|danRer3|chr2 (26235284-26235645)
               

               
               460-970, gnl|dasNov1|scaffold_106196 (10032-9650)
               

               
               460-970, gnl|echTel1|scaffold_172867 (3228-3609)
               

               
               460-970, gnl|fr1|chrUn (274760904-274760548)
               

               
               460-970, gnl|galGal2|chrUn (163698665-163698306)
               

               
               460-970, gnl|hg17|chr17 (39623390-39623773)
               

               
               460-970, gnl|Hg17|chr17 (39623393-39623901)
               

               
               460-970, gnl|loxAfr1|scaffold_109256 (5535-5149)
               

               
               460-970, gnl|mm7|chr11 (102397110-102397490)
               

               
               460-970, gnl|Mm7|chr11 (102397113-102397617)
               

               
               460-970, gnl|monDom2|scaffold_18 (42618575-42618188)
               

               
               460-970, gnl|oryCun1|scaffold_156445 (4731-4348)
               

               
               460-970, gnl|panTro1|chr19 (42811251-42811634)
               

               
               460-970, gnl|rheMac2|chr16 (54281062-54281445)
               

               
               460-970, gnl|rn3|chr10 (91382127-91382507)
               

               
               460-970, gnl|tetNig1|chrUn_random (102218814-102219202)
               

               
               460-970, gnl|xenTro1|scaffold_316 (735975-735592)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               460-970, gnl|bosTau2|chr19 (38105100-38104590)
               

               
               460-970, gnl|canFam2|chr9 (22525550-22525165)
               

               
               460-970, gnl|danRer3|chr2 (26235284-26235645)
               

               
               460-970, gnl|dasNov1|scaffold_106196 (10032-9650)
               

               
               460-970, gnl|echTel1|scaffold_172867 (3228-3609)
               

               
               460-970, gnl|fr1|chrUn (274760904-274760548)
               

               
               460-970, gnl|galGal2|chrUn (163698665-163698306)
               

               
               460-970, gnl|hg17|chr17 (39623390-39623773)
               

               
               460-970, gnl|Hg17|chr17 (39623393-39623901)
               

               
               460-970, gnl|loxAfr1|scaffold_109256 (5535-5149)
               

               
               460-970, gnl|mm7|chr11 (102397110-102397490)
               

               
               460-970, gnl|Mm7|chr11 (102397113-102397617)
               

               
               460-970, gnl|monDom2|scaffold_18 (42618575-42618188)
               

               
               460-970, gnl|oryCun1|scaffold_156445 (4731-4348)
               

               
               460-970, gnl|panTro1|chr19 (42811251-42811634)
               

               
               460-970, gnl|rheMac2|chr16 (54281062-54281445)
               

               
               460-970, gnl|rn3|chr10 (91382127-91382507)
               

               
               460-970, gnl|tetNig1|chrUn_random (102218814-102219202)
               

               
               460-970, gnl|xenTro1|scaffold_316 (735975-735592)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	659-970, + strand, RNAz p=0.955949
	817-970, - strand, RNAz p=0.998952

	460-970, gnl\|bosTau2\|chr19 (38105100-38104590)
	460-970, gnl\|canFam2\|chr9 (22525550-22525165)
	460-970, gnl\|danRer3\|chr2 (26235284-26235645)
	460-970, gnl\|dasNov1\|scaffold_106196 (10032-9650)
	460-970, gnl\|echTel1\|scaffold_172867 (3228-3609)
	460-970, gnl\|fr1\|chrUn (274760904-274760548)
	460-970, gnl\|galGal2\|chrUn (163698665-163698306)
	460-970, gnl\|hg17\|chr17 (39623390-39623773)
	460-970, gnl\|Hg17\|chr17 (39623393-39623901)
	460-970, gnl\|loxAfr1\|scaffold_109256 (5535-5149)
	460-970, gnl\|mm7\|chr11 (102397110-102397490)
	460-970, gnl\|Mm7\|chr11 (102397113-102397617)
	460-970, gnl\|monDom2\|scaffold_18 (42618575-42618188)
	460-970, gnl\|oryCun1\|scaffold_156445 (4731-4348)
	460-970, gnl\|panTro1\|chr19 (42811251-42811634)
	460-970, gnl\|rheMac2\|chr16 (54281062-54281445)
	460-970, gnl\|rn3\|chr10 (91382127-91382507)
	460-970, gnl\|tetNig1\|chrUn_random (102218814-102219202)
	460-970, gnl\|xenTro1\|scaffold_316 (735975-735592)