Non-Coding RNA Search

Ss1.1-Pig1-34I13.5

Sequence:


               
               GAAATCACCAGTTTATTGAATGAAAAATCCAACATCCACTCGGTCCTCCCGCCCCGCCCT
CTCTCGGCCTGAGTGAGCAGCACGGCCCAGGAGACGCTCCGGACGGCGGGCTGAGCCGGG
GGAAGGGCTGGAGGAGTTTGGGGGAGGTATGGAGAATGAGAAAAACACTTTTCAAAGGGA
AGTTCTGTGCAAAAACTTCTAGGAGGGGTGAGGGGGCAACAGCAAAGCTCTGGACGTGCT
GGCGGGCCAGAGGGCTGTGGCCGGGAGCTCCACGCCACGTGCTCAGCTGCTTCCGAGAAG
GCCCAGGGCAGGGGGCCGAGGAGGGGCTCAGCCGTCCCCCTGCCCCCTGGACCCCAGGCT
GCAGAAAGAGGGAGACGCGGTGGGCAGGCCAGGGTCCGCCCAGGCCAGGAGCCCGGGAGT
GAGCAGGGGCACAACAGACCAGGGAAAGGAGACAGACGGACACGCGGGCACAGAAGCCAC
AGATGACACGCGGTGGGGGTGGGCCTCCCACCTCTCCCGGAGCGCAGAGTTTCGGGCAGA
GGCAGCGCTGTGCTGTGCGGAGGGGGAGAGGCGGAGGAGGAAAGTCGGCAACAAGGGGGA
GCCCCAAGGACAGGGACCGATGCCTGGCAGTCACACACAACCACCACAAGACTGGCTACA
GACGGCCAAAGACGCCCAGGGCCACAGGTGGCATCTCCAGGGGACCTGGGGTGGTGAGAG
CCATGCGTGGGGAGACCACAAAGGCCCCTCCAGCCCAGAAATCCACACAACGCCACGGCA
ATGCTGCCCTGGGGTGGAGAGGGGGTGGCGGCTGCCCCTGTGGCTATGGGGGGCAGGGGG
TCCCGTGCCCCTCACACCCCAGCAGTGGGAAGTGGCCTTGGCTTTGGCCCCACTGGAGGG
AGCAGGCTGAGTAGCGTCTGGCAGCTGAGCTTTAGAAAACGAGATCCTGGGGGGTGGGGG
TGAGGGTGGGGGAGGCTGGGCTCCCTGCCACGGCCAGGACTCCAGGTCTCCTATTTCCAG
GAAGGGAACTGGTGCCACGTGAGGGAAGAGGTGGAAGTCAGGTGAAGGAAGGCCTGGAGG
ACTCGATTCCAGGGCCCGGGGATGAGCGCCCAAAGGCCAAATCAACCTGCCCTGGGCCTG
GAGGGGAGGGCGAGGGGGCTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATCACCAGTTTATTGAATGAAAAATCCAACATCCACTCGGTCCTCCCGCCCCGCCCT
CTCTCGGCCTGAGTGAGCAGCACGGCCCAGGAGACGCTCCGGACGGCGGGCTGAGCCGGG
GGAAGGGCTGGAGGAGTTTGGGGGAGGTATGGAGAATGAGAAAAACACTTTTCAAAGGGA
AGTTCTGTGCAAAAACTTCTAGGAGGGGTGAGGGGGCAACAGCAAAGCTCTGGACGTGCT
GGCGGGCCAGAGGGCTGTGGCCGGGAGCTCCACGCCACGTGCTCAGCTGCTTCCGAGAAG
GCCCAGGGCAGGGGGCCGAGGAGGGGCTCAGCCGTCCCCCTGCCCCCTGGACCCCAGGCT
GCAGAAAGAGGGAGACGCGGTGGGCAGGCCAGGGTCCGCCCAGGCCAGGAGCCCGGGAGT
GAGCAGGGGCACAACAGACCAGGGAAAGGAGACAGACGGACACGCGGGCACAGAAGCCAC
AGATGACACGCGGTGGGGGTGGGCCTCCCACCTCTCCCGGAGCGCAGAGTTTCGGGCAGA
GGCAGCGCTGTGCTGTGCGGAGGGGGAGAGGCGGAGGAGGAAAGTCGGCAACAAGGGGGA
GCCCCAAGGACAGGGACCGATGCCTGGCAGTCACACACAACCACCACAAGACTGGCTACA
GACGGCCAAAGACGCCCAGGGCCACAGGTGGCATCTCCAGGGGACCTGGGGTGGTGAGAG
CCATGCGTGGGGAGACCACAAAGGCCCCTCCAGCCCAGAAATCCACACAACGCCACGGCA
ATGCTGCCCTGGGGTGGAGAGGGGGTGGCGGCTGCCCCTGTGGCTATGGGGGGCAGGGGG
TCCCGTGCCCCTCACACCCCAGCAGTGGGAAGTGGCCTTGGCTTTGGCCCCACTGGAGGG
AGCAGGCTGAGTAGCGTCTGGCAGCTGAGCTTTAGAAAACGAGATCCTGGGGGGTGGGGG
TGAGGGTGGGGGAGGCTGGGCTCCCTGCCACGGCCAGGACTCCAGGTCTCCTATTTCCAG
GAAGGGAACTGGTGCCACGTGAGGGAAGAGGTGGAAGTCAGGTGAAGGAAGGCCTGGAGG
ACTCGATTCCAGGGCCCGGGGATGAGCGCCCAAAGGCCAAATCAACCTGCCCTGGGCCTG
GAGGGGAGGGCGAGGGGGCTGCCC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               39-193, + strand, RNAz p=0.598291
               

               
               888-984, - strand, RNAz p=0.729544
               

               
               969-1080, - strand, RNAz p=0.612776
               

               
               1042-1155, - strand, RNAz p=0.525796

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-193, + strand, RNAz p=0.598291
               

               
               888-984, - strand, RNAz p=0.729544
               

               
               969-1080, - strand, RNAz p=0.612776
               

               
               1042-1155, - strand, RNAz p=0.525796

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018026, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018026, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-234, gnl|bosTau2|chr29 (39850374-39850137)
               

               
               1-234, gnl|Hg17|chr11 (65768783-65768560)
               

               
               1-234, gnl|Mm7|chr19 (5028499-5028717)
               


               
               811-1155, gnl|bosTau2|chr29 (39849656-39849310)
               

               
               811-1155, gnl|canFam2|chr18 (54082143-54081932)
               

               
               811-1155, gnl|echTel1|scaffold_108206 (310-80)
               

               
               811-1155, gnl|hg17|chr11 (65767487-65767754)
               

               
               811-1155, gnl|Hg17|chr11 (65767955-65767544)
               

               
               811-1155, gnl|loxAfr1|scaffold_147929 (654-379)
               

               
               811-1155, gnl|mm7|chr19 (5029561-5029326)
               

               
               811-1155, gnl|Mm7|chr19 (5029202-5029521)
               

               
               811-1155, gnl|monDom2|scaffold_107 (2697627-2697410)
               

               
               811-1155, gnl|panTro1|chr9 (67019069-67019336)
               

               
               811-1155, gnl|rheMac2|chr14 (8201612-8201345)
               

               
               811-1155, gnl|rn3|chr1 (207905491-207905260)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-234, gnl|bosTau2|chr29 (39850374-39850137)
               

               
               1-234, gnl|Hg17|chr11 (65768783-65768560)
               

               
               1-234, gnl|Mm7|chr19 (5028499-5028717)
               


               
               811-1155, gnl|bosTau2|chr29 (39849656-39849310)
               

               
               811-1155, gnl|canFam2|chr18 (54082143-54081932)
               

               
               811-1155, gnl|echTel1|scaffold_108206 (310-80)
               

               
               811-1155, gnl|hg17|chr11 (65767487-65767754)
               

               
               811-1155, gnl|Hg17|chr11 (65767955-65767544)
               

               
               811-1155, gnl|loxAfr1|scaffold_147929 (654-379)
               

               
               811-1155, gnl|mm7|chr19 (5029561-5029326)
               

               
               811-1155, gnl|Mm7|chr19 (5029202-5029521)
               

               
               811-1155, gnl|monDom2|scaffold_107 (2697627-2697410)
               

               
               811-1155, gnl|panTro1|chr9 (67019069-67019336)
               

               
               811-1155, gnl|rheMac2|chr14 (8201612-8201345)
               

               
               811-1155, gnl|rn3|chr1 (207905491-207905260)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               med (0.232504)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	39-193, + strand, RNAz p=0.598291
	888-984, - strand, RNAz p=0.729544
	969-1080, - strand, RNAz p=0.612776
	1042-1155, - strand, RNAz p=0.525796

	1-234, gnl\|bosTau2\|chr29 (39850374-39850137)
	1-234, gnl\|Hg17\|chr11 (65768783-65768560)
	1-234, gnl\|Mm7\|chr19 (5028499-5028717)

	811-1155, gnl\|bosTau2\|chr29 (39849656-39849310)
	811-1155, gnl\|canFam2\|chr18 (54082143-54081932)
	811-1155, gnl\|echTel1\|scaffold_108206 (310-80)
	811-1155, gnl\|hg17\|chr11 (65767487-65767754)
	811-1155, gnl\|Hg17\|chr11 (65767955-65767544)
	811-1155, gnl\|loxAfr1\|scaffold_147929 (654-379)
	811-1155, gnl\|mm7\|chr19 (5029561-5029326)
	811-1155, gnl\|Mm7\|chr19 (5029202-5029521)
	811-1155, gnl\|monDom2\|scaffold_107 (2697627-2697410)
	811-1155, gnl\|panTro1\|chr9 (67019069-67019336)
	811-1155, gnl\|rheMac2\|chr14 (8201612-8201345)
	811-1155, gnl\|rn3\|chr1 (207905491-207905260)

	med (0.232504)
	ece (0.229305)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	clu (0.119646)
	ecc (0.115035)
	cty (0.10408)