Ss1.1-Pig1-34I19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTCACCCGAGGCTCGGCGGCTGATGAGGCTCCCGGAACATGGCAGCCTGTGCATGGC TCGTCCTGGGAGGAGCTGACTTTAGTCATCGTGATGCCTAAGAATCAAGTGTGACGTCTC TCCAGGTACTTCATGGTTTCCTCCTCCCTCCTCTCCCCATCGCTGCTCTACGTGGCTCCT AAAACATGGGGGAAAACGAGGACGAGAAGCAGACCCAGGCCGGGCAGGTTTTCGAGAACT TCGTGCAGGCGTCCACATGCAAAGGCACCCTCCAGGCCTTCAACATCCTCACCCGGCACC TGGACCTAGACCCCCTGGACCACAGAAACTTTTATTCCAAGCTCAAGTCCAAGGTGACCA CCTGGAAGGCCAAGGCCCTGTGGTACAAACTGGACAAGCGTGGGTCCCACAAAGAGTATA AGCGAGGGAAGTCGTGTATGAACACCAAGTGTCTCATCATCGGGGGAGGACCATGTGGTT TGCGCACTGCCATTGAACTTGCCTACCTAGGGGCCAAAGTGGTCGTGGTGGAGAAGAGGG ACACCTTCTCCCGGAACAACGTGCTGCACCTCTGGCCTTTCACCATCCATGACCTGCGGG GCCTCGGAGCCAAGAAGTTCTACGGGAAGTTCTGTGCCGGCTCCATCGACCACATCAGTA TTCGTCAGTTGCAGCTGATTCTGTTCAAGGTGGCCTTGCTATTGGGGGTGGAAATCCATG TGAACGTGGAGTTTGTGAAGGTTCTAGAGCCTCCTGAAGATCAGGAAAATCAAAAAATTG GCTGGCGAGCAGAGTTTCTCCCTGCAGACCACTCTCTATCGGAGTTCGAGTTTGATGTCA TCATTGGTGCCGATGGCCGCAGGAACACCCTGGAAGGGTTCAGAAGAAAAGAATTCCGTG GGAAGCTGGCTATTGCAATCACCGCCAACTTCATAAACAGAAACAGCACAGCTGAGGCCA AGGTGGAAGAGATTAGTGGCGTGGCTTTCATCTTCAATCAGAAGTTTTTTCAGGACCTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTCACCCGAGGCTCGGCGGCTGATGAGGCTCCCGGAACATGGCAGCCTGTGCATGGC TCGTCCTGGGAGGAGCTGACTTTAGTCATCGTGATGCCTAAGAATCAAGTGTGACGTCTC TCCAGGTACTTCATGGTTTCCTCCTCCCTCCTCTCCCCATCGCTGCTCTACGTGGCTCCT AAAACATGGGGGAAAACGAGGACGAGAAGCAGACCCAGGCCGGGCAGGTTTTCGAGAACT TCGTGCAGGCGTCCACATGCAAAGGCACCCTCCAGGCCTTCAACATCCTCACCCGGCACC TGGACCTAGACCCCCTGGACCACAGAAACTTTTATTCCAAGCTCAAGTCCAAGGTGACCA CCTGGAAGGCCAAGGCCCTGTGGTACAAACTGGACAAGCGTGGGTCCCACAAAGAGTATA AGCGAGGGAAGTCGTGTATGAACACCAAGTGTCTCATCATCGGGGGAGGACCATGTGGTT TGCGCACTGCCATTGAACTTGCCTACCTAGGGGCCAAAGTGGTCGTGGTGGAGAAGAGGG ACACCTTCTCCCGGAACAACGTGCTGCACCTCTGGCCTTTCACCATCCATGACCTGCGGG GCCTCGGAGCCAAGAAGTTCTACGGGAAGTTCTGTGCCGGCTCCATCGACCACATCAGTA TTCGTCAGTTGCAGCTGATTCTGTTCAAGGTGGCCTTGCTATTGGGGGTGGAAATCCATG TGAACGTGGAGTTTGTGAAGGTTCTAGAGCCTCCTGAAGATCAGGAAAATCAAAAAATTG GCTGGCGAGCAGAGTTTCTCCCTGCAGACCACTCTCTATCGGAGTTCGAGTTTGATGTCA TCATTGGTGCCGATGGCCGCAGGAACACCCTGGAAGGGTTCAGAAGAAAAGAATTCCGTG GGAAGCTGGCTATTGCAATCACCGCCAACTTCATAAACAGAAACAGCACAGCTGAGGCCA AGGTGGAAGAGATTAGTGGCGTGGCTTTCATCTTCAATCAGAAGTTTTTTCAGGACCTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 265-424, - strand, RNAz p=0.985995 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 265-424, - strand, RNAz p=0.985995 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 106-449, gnl|bosTau2|chr15 (26303761-26304104) | |
| 106-449, gnl|Hg17|chr11 (12140199-12140542) | |
| 106-449, gnl|Mm7|chr7 (108187248-108187590) | |
| 658-774, gnl|bosTau2|chr15 (26066401-26066285) | |
| 658-774, gnl|canFam2|chr21 (38426720-38426879) | |
| 658-774, gnl|danRer3|chrUn (49606864-49606729) | |
| 658-774, gnl|echTel1|scaffold_314234 (40126-39967) | |
| 658-774, gnl|fr1|chrUn (36878108-36878250) | |
| 658-774, gnl|galGal2|chr5 (5580469-5580314) | |
| 658-774, gnl|hg17|chr11 (12186119-12186273) | |
| 658-774, gnl|Hg17|chr11 (12186146-12186262) | |
| 658-774, gnl|loxAfr1|scaffold_75829 (1034-875) | |
| 658-774, gnl|mm7|chr7 (108222996-108223152) | |
| 658-774, gnl|Mm7|chr7 (108223025-108223141) | |
| 658-774, gnl|monDom2|scaffold_10 (62727725-62727880) | |
| 658-774, gnl|oryCun1|scaffold_173916 (10655-10814) | |
| 658-774, gnl|panTro1|chr23 (16684428-16684313) | |
| 658-774, gnl|rheMac2|chr14 (59710248-59710094) | |
| 658-774, gnl|rn3|chr1 (170229066-170229222) | |
| 658-774, gnl|tetNig1|chr5 (6140369-6140497) | |
| 658-774, gnl|xenTro1|scaffold_621 (663572-663708) | |
| 875-1020, gnl|bosTau2|chr15 (26061018-26060873) | |
| 875-1020, gnl|Hg17|chr11 (12191376-12191521) | |
| 875-1020, gnl|Mm7|chr7 (108227335-108227480) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-449, gnl|bosTau2|chr15 (26303761-26304104) | |
| 106-449, gnl|Hg17|chr11 (12140199-12140542) | |
| 106-449, gnl|Mm7|chr7 (108187248-108187590) | |
| 658-774, gnl|bosTau2|chr15 (26066401-26066285) | |
| 658-774, gnl|canFam2|chr21 (38426720-38426879) | |
| 658-774, gnl|danRer3|chrUn (49606864-49606729) | |
| 658-774, gnl|echTel1|scaffold_314234 (40126-39967) | |
| 658-774, gnl|fr1|chrUn (36878108-36878250) | |
| 658-774, gnl|galGal2|chr5 (5580469-5580314) | |
| 658-774, gnl|hg17|chr11 (12186119-12186273) | |
| 658-774, gnl|Hg17|chr11 (12186146-12186262) | |
| 658-774, gnl|loxAfr1|scaffold_75829 (1034-875) | |
| 658-774, gnl|mm7|chr7 (108222996-108223152) | |
| 658-774, gnl|Mm7|chr7 (108223025-108223141) | |
| 658-774, gnl|monDom2|scaffold_10 (62727725-62727880) | |
| 658-774, gnl|oryCun1|scaffold_173916 (10655-10814) | |
| 658-774, gnl|panTro1|chr23 (16684428-16684313) | |
| 658-774, gnl|rheMac2|chr14 (59710248-59710094) | |
| 658-774, gnl|rn3|chr1 (170229066-170229222) | |
| 658-774, gnl|tetNig1|chr5 (6140369-6140497) | |
| 658-774, gnl|xenTro1|scaffold_621 (663572-663708) | |
| 875-1020, gnl|bosTau2|chr15 (26061018-26060873) | |
| 875-1020, gnl|Hg17|chr11 (12191376-12191521) | |
| 875-1020, gnl|Mm7|chr7 (108227335-108227480) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |