Non-Coding RNA Search

Ss1.1-Pig1-34N22.5

Sequence:


               
               CTTTAATCATCCAGAATGATGATAGATTTTTCCCCACCACCCTCCCGCCATCAAAAACAC
CACAAAACCAATATTCTTTGCGATTGTGATCTTTGGCCCCTTTCCCCAGTCTCACACTGT
CCCTCTGGACAAAGGATCACACATGGGTCATTAGCAAGCGAGAGGTACTGAGGTGATCAC
ACAGAATGTTAGGGTGGAAGCCATTCCTGGTGTATGGGTCTTCGTCCTGCAACCCATGAG
GGCAGCCCCTGCTTTAATGAACTTCTGCCTGCCAACTGGACAGCATACCTGTTCAAGAGA
TCACACGTCCTCCAGCCAGCAGCTAATTGTTCAAGAAGTTGTATTGAACTTATAAAAAGA
CCACTTGTTGAAATCCTGCCTACCCCTATGGCTTTCCCCTATTTCTCTTAATGCTTAGAG
AAGAATCTGACCTGAAGAAGAAACACATGGGGGTATGCACAAAGAAAAAGACATGAATCT
TTATTTTTCACTGCCAGCTTCAATGAAAGAAAACTTTTTCTACGATTTGCATGAGGGAAT
TTTTTTTTTAATTGTATGTACTCATGGTTATAAACTGAAATGTACTGTAACATACAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAATCATCCAGAATGATGATAGATTTTTCCCCACCACCCTCCCGCCATCAAAAACAC
CACAAAACCAATATTCTTTGCGATTGTGATCTTTGGCCCCTTTCCCCAGTCTCACACTGT
CCCTCTGGACAAAGGATCACACATGGGTCATTAGCAAGCGAGAGGTACTGAGGTGATCAC
ACAGAATGTTAGGGTGGAAGCCATTCCTGGTGTATGGGTCTTCGTCCTGCAACCCATGAG
GGCAGCCCCTGCTTTAATGAACTTCTGCCTGCCAACTGGACAGCATACCTGTTCAAGAGA
TCACACGTCCTCCAGCCAGCAGCTAATTGTTCAAGAAGTTGTATTGAACTTATAAAAAGA
CCACTTGTTGAAATCCTGCCTACCCCTATGGCTTTCCCCTATTTCTCTTAATGCTTAGAG
AAGAATCTGACCTGAAGAAGAAACACATGGGGGTATGCACAAAGAAAAAGACATGAATCT
TTATTTTTCACTGCCAGCTTCAATGAAAGAAAACTTTTTCTACGATTTGCATGAGGGAAT
TTTTTTTTTAATTGTATGTACTCATGGTTATAAACTGAAATGTACTGTAACATACAGAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               37-150, - strand, RNAz p=0.973744
               

               
               382-501, - strand, RNAz p=0.693982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-150, - strand, RNAz p=0.973744
               

               
               382-501, - strand, RNAz p=0.693982

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-592, gnl|bosTau2|chr3 (11675277-11675855)
               

               
               1-592, gnl|Hg17|chr1 (148189651-148189062)
               

               
               1-592, gnl|Mm7|chr3 (94754939-94755483)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr3 (11675277-11675855)
               

               
               1-592, gnl|Hg17|chr1 (148189651-148189062)
               

               
               1-592, gnl|Mm7|chr3 (94754939-94755483)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

	37-150, - strand, RNAz p=0.973744
	382-501, - strand, RNAz p=0.693982

	1-592, gnl\|bosTau2\|chr3 (11675277-11675855)
	1-592, gnl\|Hg17\|chr1 (148189651-148189062)
	1-592, gnl\|Mm7\|chr3 (94754939-94755483)