Non-Coding RNA Search

Ss1.1-Pig1-35E08.5

Sequence:


               
               CAGACCTCTAGGGACAGAAATGACCATGCGTTGATGGCATCTTGGCTCCTTTTGTCACAG
GAATGCTGAAGGGGTGACAGGGAAGTGTCTTCCTTGTAGACCAGACTTTGGCAGCTAATG
GGGAGATGGGCTCCTGTTATCTTTCCAGGCTTGGGGTCCCAAGAAAGTCTTTTGGCCTTG
CTGTCGCCCCATCCCCCGGGGGCTTGACCTACATCGTTCCTGTAGCCCAGCTGGGTAGGG
GGGAGTCAGCTCTCCTTCCCCATGCAACTTGGAGAAAGGCAGCCGGGCTGGTGGTCTGAG
AGACCCGTCACCCACCCTCAGGGAGCTGGGTTTCCTCAGGGGCTCAGCTGGGCAGCACTT
TTTTTTTTTTTTTTAAGTTTGTAGCATTAAGTTGGCTTCAAATATGAAGTTGGCTCTGTG
GGGTTGCTCCTAAGCTGACCTACTGGCATCTGAAGTTTGGAAGGTGGGCTTCAATGTGAG
CTCATGCCCACCTGGGGACAGTCATACCTTGTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACCTCTAGGGACAGAAATGACCATGCGTTGATGGCATCTTGGCTCCTTTTGTCACAG
GAATGCTGAAGGGGTGACAGGGAAGTGTCTTCCTTGTAGACCAGACTTTGGCAGCTAATG
GGGAGATGGGCTCCTGTTATCTTTCCAGGCTTGGGGTCCCAAGAAAGTCTTTTGGCCTTG
CTGTCGCCCCATCCCCCGGGGGCTTGACCTACATCGTTCCTGTAGCCCAGCTGGGTAGGG
GGGAGTCAGCTCTCCTTCCCCATGCAACTTGGAGAAAGGCAGCCGGGCTGGTGGTCTGAG
AGACCCGTCACCCACCCTCAGGGAGCTGGGTTTCCTCAGGGGCTCAGCTGGGCAGCACTT
TTTTTTTTTTTTTTAAGTTTGTAGCATTAAGTTGGCTTCAAATATGAAGTTGGCTCTGTG
GGGTTGCTCCTAAGCTGACCTACTGGCATCTGAAGTTTGGAAGGTGGGCTTCAATGTGAG
CTCATGCCCACCTGGGGACAGTCATACCTTGTCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-228, + strand, RNAz p=0.840771

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-228, + strand, RNAz p=0.840771

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               8-272, gnl|bosTau2|chr2 (82640120-82640391)
               

               
               8-272, gnl|canFam2|chr2 (78814203-78813798)
               

               
               8-272, gnl|echTel1|scaffold_312400 (53262-52917)
               

               
               8-272, gnl|hg17|chr1 (23580260-23580625)
               

               
               8-272, gnl|Hg17|chr1 (23580528-23580281)
               

               
               8-272, gnl|loxAfr1|scaffold_133205 (3683-4044)
               

               
               8-272, gnl|mm7|chr4 (135572713-135572321)
               

               
               8-272, gnl|Mm7|chr4 (135572425-135572694)
               

               
               8-272, gnl|oryCun1|scaffold_196062 (5577-5304)
               

               
               8-272, gnl|panTro1|chr1 (23957515-23957883)
               

               
               8-272, gnl|rheMac2|chr1 (26110000-26110369)
               

               
               8-272, gnl|rn3|chr6 (48936379-48936016)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-272, gnl|bosTau2|chr2 (82640120-82640391)
               

               
               8-272, gnl|canFam2|chr2 (78814203-78813798)
               

               
               8-272, gnl|echTel1|scaffold_312400 (53262-52917)
               

               
               8-272, gnl|hg17|chr1 (23580260-23580625)
               

               
               8-272, gnl|Hg17|chr1 (23580528-23580281)
               

               
               8-272, gnl|loxAfr1|scaffold_133205 (3683-4044)
               

               
               8-272, gnl|mm7|chr4 (135572713-135572321)
               

               
               8-272, gnl|Mm7|chr4 (135572425-135572694)
               

               
               8-272, gnl|oryCun1|scaffold_196062 (5577-5304)
               

               
               8-272, gnl|panTro1|chr1 (23957515-23957883)
               

               
               8-272, gnl|rheMac2|chr1 (26110000-26110369)
               

               
               8-272, gnl|rn3|chr6 (48936379-48936016)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	8-272, gnl\|bosTau2\|chr2 (82640120-82640391)
	8-272, gnl\|canFam2\|chr2 (78814203-78813798)
	8-272, gnl\|echTel1\|scaffold_312400 (53262-52917)
	8-272, gnl\|hg17\|chr1 (23580260-23580625)
	8-272, gnl\|Hg17\|chr1 (23580528-23580281)
	8-272, gnl\|loxAfr1\|scaffold_133205 (3683-4044)
	8-272, gnl\|mm7\|chr4 (135572713-135572321)
	8-272, gnl\|Mm7\|chr4 (135572425-135572694)
	8-272, gnl\|oryCun1\|scaffold_196062 (5577-5304)
	8-272, gnl\|panTro1\|chr1 (23957515-23957883)
	8-272, gnl\|rheMac2\|chr1 (26110000-26110369)
	8-272, gnl\|rn3\|chr6 (48936379-48936016)