Non-Coding RNA Search

Ss1.1-Pig1-36B10.5

Sequence:


               
               AACTGCGGTATTATCCTAATTTAAAAGAAGATCGGTTTTTAATAATTTTTTATTTTCATA
GGATGAAGTTAGAGAAAATATTCAGCTGTACACACAAAGTCTGGTTTTTCCTGCCCAACT
TCCCCCTGGAAGGTGTGCTTTTTGTTGTTTAATGTGTAGCTTGTTTGTGCCCTGTTGACA
TAAACGTTTCCTGGGTTTGTTCTTTGACAATAAATGGAAAAGGAAGGTCCCCCAGCTCCA
TCGGGCCACTCCCCTCCTCCGTATTGAAGCTCCTGAAAAGGCTGCGGTAGGATCTCGACA
CAGCAGTTCCTCCTCCTCTTTCCCGCACTGTCGCTCCTTGCCGGCACCAGCTCGGAGCGC
TAAGAGGTGGGAGCCCACACGTCCCTCGTCTTCCCTCCTGCAGAGCTAGCAACCAAGCTC
AATGGCAACCTGACATTTCCCATCACCATCTGCCTCATAGGTCTCCTCGTTCCCTCTCCC
TCTGCCCACCAAGTCCTCATACCTGCAAAGACCCCCTGGGTCCCCCTTGTGCCCTCTTTT
GGGGCAGCCTGTTGAAACTGAAGCACAGTCTGACCACTCACGATAAAGCAGATTCTCCTC
TGCCTCTGTCAGCCACGAGGTTTCAGAGCAGCGTAGTCCAGGGGCGCCTTTTCTCGCCAC
GAGAAGCCCATTCCTACGGGAGGAAGTCTAGCGAAGCAATATGACTCAGCCCAGCGCTCT
CTGCCCGGGACTCATGGCTCTGCTGTGCCTTCCATCCTGGGCTCCCTGTTCTTCCGTGAC
CTTAAGAACTTTGGTGGCTCTGCTGGAACATTGTCACTGTTTTCACTGTCATGCAGGGAG
CCCAGCACTGTGGCCAGGATGGCAGAGACTCCCTGTCATCGTGGAGGAGTGCCAGCAGGG
GACTGGGGAAACGCACTCCACCCAGACCTCACCTCCCTTCCTCCTTTTGCCCGCGAACAA
GATACAGTGGCCCGAGGGGTTCCACTAGTGTCTGGTTTCCTTTATTATTGCACTGTGTGA
GGTTTTTTTGTAAATCCTTTTATTCCTTTTTTTTTTTTTTTTTTTAAAGAAAAAACCTTA
AGCTACATTTGTTACTGAAATGATTAATGCACTGATGGGTCATGAATTCACCTTGAGAAA
GACCCAAAGGCCAGTCCGGGGTGGGGGAAACTCAGCTAAATAGACCTAGTTACTGCCCTG
CTAGGCCATGCTGTACTGTGAGCCCCCTCCTCATCTCTTTCTACCAATCCCAAACCCTGA
GGCCAGGGGAGGAACCCACGGCTTTCCTCCTCCTGCCAGCTGCAGATGGTTTGCCTTGCC
TTTCCACTCCCACCATCAACCACAGAGACAAGTGATTCCTCTTAGAGCTCAGCCTTGAGT
CCATTGCCAAAATTCAGCGTACCTGCCAGCAACTTGGGGAATAAGCTAAGGTTTCCCTAC
AAGAGGGAAAGAAGGCAAAAACCGGCATAGCTATCTCCAAAACACCTCTGCGTTTGTTTC
GAAAGTGACCAAGGGAAACTCCGCACAAAAGTGCAGACTGAGGAACTGTGGTGGGTCGTT
CCCAAGAATCCCCCAAGGGGCATCCCAAATCCCTAAGGAGGAACAGCTGCAAACCTGGTC
AGTTCTCAGTGAGAGAGCCAGCTCACTTACAGCTTTGCTGCTAGAACCTGTTGTGGCTGC
ATTTCCTGGTGGCCAGTGACAACTGTGTAACCAGAATAGCTGCATGGCGCTGACCCTTTG
GCCGGAACATGGTCCTTTGGCTCCCTCTGCTACCGTCCACCACCTTCAGCCCAGCCCCTC
CTGTTTTTAGACCAATAACAAGAATCAAGGGGGAAGTCCTGGCAGCTCTATGTAAGTTTT
CAACCAGATTCCTTTGCCAGGATCCATCCCGCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGCGGTATTATCCTAATTTAAAAGAAGATCGGTTTTTAATAATTTTTTATTTTCATA
GGATGAAGTTAGAGAAAATATTCAGCTGTACACACAAAGTCTGGTTTTTCCTGCCCAACT
TCCCCCTGGAAGGTGTGCTTTTTGTTGTTTAATGTGTAGCTTGTTTGTGCCCTGTTGACA
TAAACGTTTCCTGGGTTTGTTCTTTGACAATAAATGGAAAAGGAAGGTCCCCCAGCTCCA
TCGGGCCACTCCCCTCCTCCGTATTGAAGCTCCTGAAAAGGCTGCGGTAGGATCTCGACA
CAGCAGTTCCTCCTCCTCTTTCCCGCACTGTCGCTCCTTGCCGGCACCAGCTCGGAGCGC
TAAGAGGTGGGAGCCCACACGTCCCTCGTCTTCCCTCCTGCAGAGCTAGCAACCAAGCTC
AATGGCAACCTGACATTTCCCATCACCATCTGCCTCATAGGTCTCCTCGTTCCCTCTCCC
TCTGCCCACCAAGTCCTCATACCTGCAAAGACCCCCTGGGTCCCCCTTGTGCCCTCTTTT
GGGGCAGCCTGTTGAAACTGAAGCACAGTCTGACCACTCACGATAAAGCAGATTCTCCTC
TGCCTCTGTCAGCCACGAGGTTTCAGAGCAGCGTAGTCCAGGGGCGCCTTTTCTCGCCAC
GAGAAGCCCATTCCTACGGGAGGAAGTCTAGCGAAGCAATATGACTCAGCCCAGCGCTCT
CTGCCCGGGACTCATGGCTCTGCTGTGCCTTCCATCCTGGGCTCCCTGTTCTTCCGTGAC
CTTAAGAACTTTGGTGGCTCTGCTGGAACATTGTCACTGTTTTCACTGTCATGCAGGGAG
CCCAGCACTGTGGCCAGGATGGCAGAGACTCCCTGTCATCGTGGAGGAGTGCCAGCAGGG
GACTGGGGAAACGCACTCCACCCAGACCTCACCTCCCTTCCTCCTTTTGCCCGCGAACAA
GATACAGTGGCCCGAGGGGTTCCACTAGTGTCTGGTTTCCTTTATTATTGCACTGTGTGA
GGTTTTTTTGTAAATCCTTTTATTCCTTTTTTTTTTTTTTTTTTTAAAGAAAAAACCTTA
AGCTACATTTGTTACTGAAATGATTAATGCACTGATGGGTCATGAATTCACCTTGAGAAA
GACCCAAAGGCCAGTCCGGGGTGGGGGAAACTCAGCTAAATAGACCTAGTTACTGCCCTG
CTAGGCCATGCTGTACTGTGAGCCCCCTCCTCATCTCTTTCTACCAATCCCAAACCCTGA
GGCCAGGGGAGGAACCCACGGCTTTCCTCCTCCTGCCAGCTGCAGATGGTTTGCCTTGCC
TTTCCACTCCCACCATCAACCACAGAGACAAGTGATTCCTCTTAGAGCTCAGCCTTGAGT
CCATTGCCAAAATTCAGCGTACCTGCCAGCAACTTGGGGAATAAGCTAAGGTTTCCCTAC
AAGAGGGAAAGAAGGCAAAAACCGGCATAGCTATCTCCAAAACACCTCTGCGTTTGTTTC
GAAAGTGACCAAGGGAAACTCCGCACAAAAGTGCAGACTGAGGAACTGTGGTGGGTCGTT
CCCAAGAATCCCCCAAGGGGCATCCCAAATCCCTAAGGAGGAACAGCTGCAAACCTGGTC
AGTTCTCAGTGAGAGAGCCAGCTCACTTACAGCTTTGCTGCTAGAACCTGTTGTGGCTGC
ATTTCCTGGTGGCCAGTGACAACTGTGTAACCAGAATAGCTGCATGGCGCTGACCCTTTG
GCCGGAACATGGTCCTTTGGCTCCCTCTGCTACCGTCCACCACCTTCAGCCCAGCCCCTC
CTGTTTTTAGACCAATAACAAGAATCAAGGGGGAAGTCCTGGCAGCTCTATGTAAGTTTT
CAACCAGATTCCTTTGCCAGGATCCATCCCGCTTGC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               430-548, - strand, RNAz p=0.845895
               

               
               658-931, - strand, RNAz p=0.881814
               

               
               1202-1321, - strand, RNAz p=0.795287
               

               
               1503-1741, - strand, RNAz p=0.960353

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               430-548, - strand, RNAz p=0.845895
               

               
               658-931, - strand, RNAz p=0.881814
               

               
               1202-1321, - strand, RNAz p=0.795287
               

               
               1503-1741, - strand, RNAz p=0.960353

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               869-970, - strand, RNAmicro p=0.995418
               

               
               661-808, - strand, RNAmicro p=0.950884
               

               
               766-889, + strand, RNAmicro p=0.943414

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               869-970, - strand, RNAmicro p=0.995418
               

               
               661-808, - strand, RNAmicro p=0.950884
               

               
               766-889, + strand, RNAmicro p=0.943414

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1854, gnl|bosTau2|chr15 (15021697-15019809)
               

               
               1-1854, gnl|Hg17|chr11 (117899568-117901418)
               

               
               1-1854, gnl|Mm7|chr9 (44740839-44739095)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1854, gnl|bosTau2|chr15 (15021697-15019809)
               

               
               1-1854, gnl|Hg17|chr11 (117899568-117901418)
               

               
               1-1854, gnl|Mm7|chr9 (44740839-44739095)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.45861)
               

               
               nep (0.183925)
               

               
               ill (0.175593)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               nep (0.183925)
               

               
               ill (0.175593)

	430-548, - strand, RNAz p=0.845895
	658-931, - strand, RNAz p=0.881814
	1202-1321, - strand, RNAz p=0.795287
	1503-1741, - strand, RNAz p=0.960353

	869-970, - strand, RNAmicro p=0.995418
	661-808, - strand, RNAmicro p=0.950884
	766-889, + strand, RNAmicro p=0.943414

	1-1854, gnl\|bosTau2\|chr15 (15021697-15019809)
	1-1854, gnl\|Hg17\|chr11 (117899568-117901418)
	1-1854, gnl\|Mm7\|chr9 (44740839-44739095)