Non-Coding RNA Search

Ss1.1-Pig1-36E15.5

Sequence:


               
               GGGACGGCCATGGCAGGTTTTCAGAGAATATCCTTTATCTACTAAAATTGAATCCTTAGG
AAATATTAGCTAAAACGTTTTGATTTTTAAGAAGTAATATATCTATAAAGAGTTTTTTTA
GAGAGCCTGGAATTGGCATTTCTATGAGGTGCTATGTAATATGAAGGATTGTATGAGATG
GTTATGATATAAACTCCTTGCTTGGGCTGATAAGCAGAATGAAAAATTTTCCAGGTATTT
TAAAATTGAAAAGGTCAGTTCTCATTTCATTCCTGCTTCACCTTGGATTGCAAGCCTCTG
TGAGAGCACTGTTACTTAGATGCTCCTATGAGATTTCCATCAGGTGCTTAAAAAGTGTTC
AGTTAAAAGTTCATTTTAGAATATATAATCTTTGGGTGATGAACTAATAATTAAACACTT
TTTCCAAAGGACTAATTGAGAAGCAGTTTTTGTGTTTTCACCTTTATAGGAAAGAAACTC
ATCATATGTTTCTATACGAAACCCAACAGATAAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACGGCCATGGCAGGTTTTCAGAGAATATCCTTTATCTACTAAAATTGAATCCTTAGG
AAATATTAGCTAAAACGTTTTGATTTTTAAGAAGTAATATATCTATAAAGAGTTTTTTTA
GAGAGCCTGGAATTGGCATTTCTATGAGGTGCTATGTAATATGAAGGATTGTATGAGATG
GTTATGATATAAACTCCTTGCTTGGGCTGATAAGCAGAATGAAAAATTTTCCAGGTATTT
TAAAATTGAAAAGGTCAGTTCTCATTTCATTCCTGCTTCACCTTGGATTGCAAGCCTCTG
TGAGAGCACTGTTACTTAGATGCTCCTATGAGATTTCCATCAGGTGCTTAAAAAGTGTTC
AGTTAAAAGTTCATTTTAGAATATATAATCTTTGGGTGATGAACTAATAATTAAACACTT
TTTCCAAAGGACTAATTGAGAAGCAGTTTTTGTGTTTTCACCTTTATAGGAAAGAAACTC
ATCATATGTTTCTATACGAAACCCAACAGATAAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-421, + strand, RNAz p=0.924527

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-421, + strand, RNAz p=0.924527

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001017408, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001017408, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-482, gnl|bosTau2|chr9 (17827043-17826563)
               

               
               1-482, gnl|canFam2|chr1 (60840163-60840655)
               

               
               1-482, gnl|dasNov1|scaffold_2700 (60851-60387)
               

               
               1-482, gnl|echTel1|scaffold_308339 (6475-6991)
               

               
               1-482, gnl|hg17|chr6 (117988726-117989243)
               

               
               1-482, gnl|Hg17|chr6 (117989249-117988768)
               

               
               1-482, gnl|loxAfr1|scaffold_101576 (3795-3265)
               

               
               1-482, gnl|mm7|chr10 (52152597-52153038)
               

               
               1-482, gnl|Mm7|chr10 (52153046-52152638)
               

               
               1-482, gnl|monDom2|scaffold_0 (99891511-99890793)
               

               
               1-482, gnl|oryCun1|scaffold_105729 (8363-8832)
               

               
               1-482, gnl|panTro1|chr5 (120372293-120372801)
               

               
               1-482, gnl|rheMac2|chr4 (146427505-146426998)
               

               
               1-482, gnl|rn3|chr20 (31069521-31069994)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-482, gnl|bosTau2|chr9 (17827043-17826563)
               

               
               1-482, gnl|canFam2|chr1 (60840163-60840655)
               

               
               1-482, gnl|dasNov1|scaffold_2700 (60851-60387)
               

               
               1-482, gnl|echTel1|scaffold_308339 (6475-6991)
               

               
               1-482, gnl|hg17|chr6 (117988726-117989243)
               

               
               1-482, gnl|Hg17|chr6 (117989249-117988768)
               

               
               1-482, gnl|loxAfr1|scaffold_101576 (3795-3265)
               

               
               1-482, gnl|mm7|chr10 (52152597-52153038)
               

               
               1-482, gnl|Mm7|chr10 (52153046-52152638)
               

               
               1-482, gnl|monDom2|scaffold_0 (99891511-99890793)
               

               
               1-482, gnl|oryCun1|scaffold_105729 (8363-8832)
               

               
               1-482, gnl|panTro1|chr5 (120372293-120372801)
               

               
               1-482, gnl|rheMac2|chr4 (146427505-146426998)
               

               
               1-482, gnl|rn3|chr20 (31069521-31069994)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               kid (0.129735)

	1-482, gnl\|bosTau2\|chr9 (17827043-17826563)
	1-482, gnl\|canFam2\|chr1 (60840163-60840655)
	1-482, gnl\|dasNov1\|scaffold_2700 (60851-60387)
	1-482, gnl\|echTel1\|scaffold_308339 (6475-6991)
	1-482, gnl\|hg17\|chr6 (117988726-117989243)
	1-482, gnl\|Hg17\|chr6 (117989249-117988768)
	1-482, gnl\|loxAfr1\|scaffold_101576 (3795-3265)
	1-482, gnl\|mm7\|chr10 (52152597-52153038)
	1-482, gnl\|Mm7\|chr10 (52153046-52152638)
	1-482, gnl\|monDom2\|scaffold_0 (99891511-99890793)
	1-482, gnl\|oryCun1\|scaffold_105729 (8363-8832)
	1-482, gnl\|panTro1\|chr5 (120372293-120372801)
	1-482, gnl\|rheMac2\|chr4 (146427505-146426998)
	1-482, gnl\|rn3\|chr20 (31069521-31069994)