Ss1.1-Pig1-36M06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCCGGTGAGGATTGGAGGGCTGACGGCCGGGCGGAGCGCTGTGGATTTGGTTTTAGG CGGGAATTGGAACTGCAGCGGCAGATGCCAGCAGGAGTCTAAGAAGTGCATATTTCCTAC CTTGGAGGAGACCATGGTGCGGCCTGCGAGGCATAAGAAGCCAGTCAATTACTCCCAGTT TGAGAACTCTGACAGTGATGATGATTTTGTTCCTGCAACCGCACCGTTAAGTAAGAAATC CAGAACAACACAAAAGGAGTTAAAACTAGAAAAACCAGAACCAAAACTGAAGAACCTCCA GGAAAAAGACATCCCACTACAAGAGAAAACCCCTAAAAAAAGGATGGCTTTAGATGACAA GCTATACCAGAGAGACTTAGAAGTCGCACTGGCTTTATCAGTGAAGGAACTTCCAACTGT CACCATTGATGCGGAGGACTGTCAAGATAAAAGCACTGATGAACATGGCAGTGGAAACGC AGAAACGACAGTTAAGTCTCCTCATATCTCCAACTGCAGCGTAGCCAGTGATTATTTAGA TCTGGATAAGATCACCGAGGAAGGTGATTCTCGAGGTGCTCGAGGGAGGAGAAAGGCAGC ATCCCAAGCCACGGTCCAGCAGAGGAAGATCCTCCTGGACGGCAGTGATGGCAACGGTGA TGGTGACAGTGACTCCGAACCAGACTTTGCAACAGGTGACGATTCTGAGGATGATTCTGA TTTTTGTGAGAGTGAGGATGATGAAGCCCTCACTGTGAGAAAAAGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCCGGTGAGGATTGGAGGGCTGACGGCCGGGCGGAGCGCTGTGGATTTGGTTTTAGG CGGGAATTGGAACTGCAGCGGCAGATGCCAGCAGGAGTCTAAGAAGTGCATATTTCCTAC CTTGGAGGAGACCATGGTGCGGCCTGCGAGGCATAAGAAGCCAGTCAATTACTCCCAGTT TGAGAACTCTGACAGTGATGATGATTTTGTTCCTGCAACCGCACCGTTAAGTAAGAAATC CAGAACAACACAAAAGGAGTTAAAACTAGAAAAACCAGAACCAAAACTGAAGAACCTCCA GGAAAAAGACATCCCACTACAAGAGAAAACCCCTAAAAAAAGGATGGCTTTAGATGACAA GCTATACCAGAGAGACTTAGAAGTCGCACTGGCTTTATCAGTGAAGGAACTTCCAACTGT CACCATTGATGCGGAGGACTGTCAAGATAAAAGCACTGATGAACATGGCAGTGGAAACGC AGAAACGACAGTTAAGTCTCCTCATATCTCCAACTGCAGCGTAGCCAGTGATTATTTAGA TCTGGATAAGATCACCGAGGAAGGTGATTCTCGAGGTGCTCGAGGGAGGAGAAAGGCAGC ATCCCAAGCCACGGTCCAGCAGAGGAAGATCCTCCTGGACGGCAGTGATGGCAACGGTGA TGGTGACAGTGACTCCGAACCAGACTTTGCAACAGGTGACGATTCTGAGGATGATTCTGA TTTTTGTGAGAGTGAGGATGATGAAGCCCTCACTGTGAGAAAAAGCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr5 (63626027-63626177) | |
| 1-151, gnl|Hg17|chr12 (4518234-4518384) | |
| 1-151, gnl|Mm7|chr6 (126965157-126965015) | |
| 200-343, gnl|bosTau2|chr5 (63630096-63630239) | |
| 200-343, gnl|canFam2|chr27 (43359092-43359232) | |
| 200-343, gnl|canFam2|chr27 (43359343-43359046) | |
| 200-343, gnl|dasNov1|scaffold_47500 (7498-7632) | |
| 200-343, gnl|dasNov1|scaffold_74446 (2956-2673) | |
| 200-343, gnl|echTel1|scaffold_305748 (63538-63401) | |
| 200-343, gnl|echTel1|scaffold_305748 (63296-63583) | |
| 200-343, gnl|galGal2|chr1 (185965318-185965545) | |
| 200-343, gnl|hg17|chr12 (4523114-4523380) | |
| 200-343, gnl|Hg17|chr12 (4523189-4523332) | |
| 200-343, gnl|hg17|chr3 (138101411-138101551) | |
| 200-343, gnl|mm7|chr6 (126960238-126960373) | |
| 200-343, gnl|mm7|chr6 (126960448-126960191) | |
| 200-343, gnl|Mm7|chr6 (126960372-126960235) | |
| 200-343, gnl|monDom2|scaffold_31 (21096587-21096289) | |
| 200-343, gnl|monDom2|scaffold_98 (3550300-3550432) | |
| 200-343, gnl|oryCun1|scaffold_158559 (2004-2137) | |
| 200-343, gnl|oryCun1|scaffold_176176 (52682-52939) | |
| 200-343, gnl|panTro1|chr10 (4788560-4788826) | |
| 200-343, gnl|panTro1|chr2 (140374461-140374601) | |
| 200-343, gnl|rheMac2|chr11 (4638405-4638670) | |
| 200-343, gnl|rheMac2|chr2 (150905287-150905154) | |
| 200-343, gnl|rn3|chr4 (163562971-163563113) | |
| 200-343, gnl|rn3|chr4 (163563182-163562930) | |
| 538-697, gnl|bosTau2|chr5 (63635180-63635333) | |
| 538-697, gnl|canFam2|chr27 (43354185-43354032) | |
| 538-697, gnl|dasNov1|scaffold_47500 (7323-7173) | |
| 538-697, gnl|echTel1|scaffold_305748 (66720-66873) | |
| 538-697, gnl|hg17|chr12 (4528113-4528266) | |
| 538-697, gnl|Hg17|chr12 (4528112-4528265) | |
| 538-697, gnl|mm7|chr6 (126953063-126952910) | |
| 538-697, gnl|Mm7|chr6 (126953062-126952909) | |
| 538-697, gnl|monDom2|scaffold_31 (21090496-21090344) | |
| 538-697, gnl|oryCun1|scaffold_199384 (77244-77091) | |
| 538-697, gnl|panTro1|chr10 (4793559-4793712) | |
| 538-697, gnl|rheMac2|chr11 (4644131-4644284) | |
| 538-697, gnl|rn3|chr4 (163558152-163557999) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr5 (63626027-63626177) | |
| 1-151, gnl|Hg17|chr12 (4518234-4518384) | |
| 1-151, gnl|Mm7|chr6 (126965157-126965015) | |
| 200-343, gnl|bosTau2|chr5 (63630096-63630239) | |
| 200-343, gnl|canFam2|chr27 (43359092-43359232) | |
| 200-343, gnl|canFam2|chr27 (43359343-43359046) | |
| 200-343, gnl|dasNov1|scaffold_47500 (7498-7632) | |
| 200-343, gnl|dasNov1|scaffold_74446 (2956-2673) | |
| 200-343, gnl|echTel1|scaffold_305748 (63538-63401) | |
| 200-343, gnl|echTel1|scaffold_305748 (63296-63583) | |
| 200-343, gnl|galGal2|chr1 (185965318-185965545) | |
| 200-343, gnl|hg17|chr12 (4523114-4523380) | |
| 200-343, gnl|Hg17|chr12 (4523189-4523332) | |
| 200-343, gnl|hg17|chr3 (138101411-138101551) | |
| 200-343, gnl|mm7|chr6 (126960238-126960373) | |
| 200-343, gnl|mm7|chr6 (126960448-126960191) | |
| 200-343, gnl|Mm7|chr6 (126960372-126960235) | |
| 200-343, gnl|monDom2|scaffold_31 (21096587-21096289) | |
| 200-343, gnl|monDom2|scaffold_98 (3550300-3550432) | |
| 200-343, gnl|oryCun1|scaffold_158559 (2004-2137) | |
| 200-343, gnl|oryCun1|scaffold_176176 (52682-52939) | |
| 200-343, gnl|panTro1|chr10 (4788560-4788826) | |
| 200-343, gnl|panTro1|chr2 (140374461-140374601) | |
| 200-343, gnl|rheMac2|chr11 (4638405-4638670) | |
| 200-343, gnl|rheMac2|chr2 (150905287-150905154) | |
| 200-343, gnl|rn3|chr4 (163562971-163563113) | |
| 200-343, gnl|rn3|chr4 (163563182-163562930) | |
| 538-697, gnl|bosTau2|chr5 (63635180-63635333) | |
| 538-697, gnl|canFam2|chr27 (43354185-43354032) | |
| 538-697, gnl|dasNov1|scaffold_47500 (7323-7173) | |
| 538-697, gnl|echTel1|scaffold_305748 (66720-66873) | |
| 538-697, gnl|hg17|chr12 (4528113-4528266) | |
| 538-697, gnl|Hg17|chr12 (4528112-4528265) | |
| 538-697, gnl|mm7|chr6 (126953063-126952910) | |
| 538-697, gnl|Mm7|chr6 (126953062-126952909) | |
| 538-697, gnl|monDom2|scaffold_31 (21090496-21090344) | |
| 538-697, gnl|oryCun1|scaffold_199384 (77244-77091) | |
| 538-697, gnl|panTro1|chr10 (4793559-4793712) | |
| 538-697, gnl|rheMac2|chr11 (4644131-4644284) | |
| 538-697, gnl|rn3|chr4 (163558152-163557999) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| clu (0.119646) |