Non-Coding RNA Search

Ss1.1-Pig1-37C08.5

Sequence:


               
               AATGCCCCTCGCCTGTGAGAACTGACTCGAGGACTACGGCTCACTGCTCTCCCACCCAAA
CAAGAGCAGGCGGAGAGCAAGCGAAGGTGAGAGAGTCGGAGGCGGCGGCCTCGCACGGCC
CTCGCCCTCCTCGGGAAGCAGCCACTCGCCTCCCAGAGCGATCCGGGCTCGGAGCTGAGC
AGCCCTGCAGGCAGAAAGAGGGCGCTGGCCTTCTTGTGAATTTTTAAATGTCATCATCAT
AACGTTATTTATTTAAATGTAGTTATTTTGGTATTTAATTTTTTTTTTAAAGAGAGGGGA
AAAAACCCTGTATTTTCCTGGTGGAATGAAACGGCTCAGAATGGTATATTTAGGCAATTT
TAAAACATTTATTATTTACCTAAAGACCAAATATGATAAATCTGTTCTCAGTATTGTGTG
TCAATCCACGGTATGGAGCTGTCACAATGTTATTGCAGACGATGCGTATTAAAAATTATG
AAATGACTGCACACTAGCTGGATTTATAACTCAGCCATCTCAGAAATAAAACCATCATGT
CAACTCCAGACCACGTGTGTGACAGTGGCACAGCCTCGCTTGCAGACTGCAGCACGGACG
GGTCCGAGTGCCTCAGGCAGCAGCCTGCCTCCCAGGCACTTTCCAGAGACCTTGGAATGT
ACGTTTGTGTTTCTCTTTTGACTCAGAAGGTTTGCAGTCGGCAAAATCATTCAGATCACG
CTGTGTCCGCGTGTGAGGTTGGGTGGCTTCACTGATGGCCGCTGGAGCCCCTGACCGTGA
GTTCTGGGGAGGGAGGTGGACGGGGCCCCCCGCGGGCAGATGGCCTGGCCCGTGCTCCTA
GGAGACACGTCCCACCACCGTCGCCTGCAGGCGCCGCCTGTCGGTGGGTGATGCCCGTGT
GTGGATTGTGTGGGTCTGGGGGGCTCCCTGGTGGGCTCGTGGGTCGGAAGAGCGCCCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGCCCCTCGCCTGTGAGAACTGACTCGAGGACTACGGCTCACTGCTCTCCCACCCAAA
CAAGAGCAGGCGGAGAGCAAGCGAAGGTGAGAGAGTCGGAGGCGGCGGCCTCGCACGGCC
CTCGCCCTCCTCGGGAAGCAGCCACTCGCCTCCCAGAGCGATCCGGGCTCGGAGCTGAGC
AGCCCTGCAGGCAGAAAGAGGGCGCTGGCCTTCTTGTGAATTTTTAAATGTCATCATCAT
AACGTTATTTATTTAAATGTAGTTATTTTGGTATTTAATTTTTTTTTTAAAGAGAGGGGA
AAAAACCCTGTATTTTCCTGGTGGAATGAAACGGCTCAGAATGGTATATTTAGGCAATTT
TAAAACATTTATTATTTACCTAAAGACCAAATATGATAAATCTGTTCTCAGTATTGTGTG
TCAATCCACGGTATGGAGCTGTCACAATGTTATTGCAGACGATGCGTATTAAAAATTATG
AAATGACTGCACACTAGCTGGATTTATAACTCAGCCATCTCAGAAATAAAACCATCATGT
CAACTCCAGACCACGTGTGTGACAGTGGCACAGCCTCGCTTGCAGACTGCAGCACGGACG
GGTCCGAGTGCCTCAGGCAGCAGCCTGCCTCCCAGGCACTTTCCAGAGACCTTGGAATGT
ACGTTTGTGTTTCTCTTTTGACTCAGAAGGTTTGCAGTCGGCAAAATCATTCAGATCACG
CTGTGTCCGCGTGTGAGGTTGGGTGGCTTCACTGATGGCCGCTGGAGCCCCTGACCGTGA
GTTCTGGGGAGGGAGGTGGACGGGGCCCCCCGCGGGCAGATGGCCTGGCCCGTGCTCCTA
GGAGACACGTCCCACCACCGTCGCCTGCAGGCGCCGCCTGTCGGTGGGTGATGCCCGTGT
GTGGATTGTGTGGGTCTGGGGGGCTCCCTGGTGGGCTCGTGGGTCGGAAGAGCGCCCGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-226, - strand, RNAz p=0.859187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-226, - strand, RNAz p=0.859187

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-755, gnl|bosTau2|chr19 (44243483-44242716)
               

               
               1-755, gnl|Hg17|chr17 (78153813-78154552)
               

               
               1-755, gnl|Mm7|chr11 (121417212-121417859)
               


               
               207-728, gnl|bosTau2|chr16 (51586556-51586037)
               

               
               207-728, gnl|Hg17|chr17 (78154011-78154524)
               

               
               207-728, gnl|Mm7|chr11 (121417391-121417842)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-755, gnl|bosTau2|chr19 (44243483-44242716)
               

               
               1-755, gnl|Hg17|chr17 (78153813-78154552)
               

               
               1-755, gnl|Mm7|chr11 (121417212-121417859)
               


               
               207-728, gnl|bosTau2|chr16 (51586556-51586037)
               

               
               207-728, gnl|Hg17|chr17 (78154011-78154524)
               

               
               207-728, gnl|Mm7|chr11 (121417391-121417842)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pty (0.285429)
               

               
               duo (0.172801)
               

               
               fco (0.157208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               duo (0.172801)
               

               
               fco (0.157208)

	1-755, gnl\|bosTau2\|chr19 (44243483-44242716)
	1-755, gnl\|Hg17\|chr17 (78153813-78154552)
	1-755, gnl\|Mm7\|chr11 (121417212-121417859)

	207-728, gnl\|bosTau2\|chr16 (51586556-51586037)
	207-728, gnl\|Hg17\|chr17 (78154011-78154524)
	207-728, gnl\|Mm7\|chr11 (121417391-121417842)