Ss1.1-Pig1-37F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCCCAGGAGCGGACTGTGCTGGCCGAGTGCCGGCTGGACCCAGCTGACCTGCAGTTG CTGCTGGACTGGGTGGGGGCCCCGGCCTTTGCTGCAGGCGAGGCATGGGCACCGGTGTGC CTGCCCCGCTTCAATCCCGATGGTTTCTTCTATGCCTACGTGGCCCGTCTCGACGCCATG CCTGTCTGCCTGCTGCTGCTTGGCACCGACCCTGAGGCCTTCCATGACATGGCCACCTGC CGGCGCCTGGTTGAAGATGGCATGCACTCCCTTGGGGCCATGCGTGCCCTCCGGGAGGCT GCCAGCTTCTCCGATGCCCCATCAGCCAATGCCTCTGCCTACAGTGTGCAGGCTGTGGGG GCACCTGGCCTCCGGCACTTCCTCTATAAGCCGCTGGACATCCCCGACCATCACCGCCAG CTGCCCCAGTTTACCAGTCCTGAGCTAGAAGCCCCGTACAGCAGAGAGGAAGAGCGCCAG CGCCTGTCGGACCTGTACCACCGCCTGCACGCCCGCCTCCATAACACCTCCCGGCCTCTG CGCCTCATTTACCACGTGGCAGAGAAGGAGACGCTGCTGGCCTGGGTGACCTCCAAATTT GAGTTGTATACCTGCCTCAGCCCCCTGGTGACCAAGGCGGGTGCCATCCTCGTAGTGACC AAACTCCTGCGTTGGGTGAAGAAAGAGGAGGATCGGCTCTTCATTCGTTACCCACCCAAG TACTCGACACCCCCAGCAGCCCCAGCTGCCTCTACAGACCAAGCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCCCAGGAGCGGACTGTGCTGGCCGAGTGCCGGCTGGACCCAGCTGACCTGCAGTTG CTGCTGGACTGGGTGGGGGCCCCGGCCTTTGCTGCAGGCGAGGCATGGGCACCGGTGTGC CTGCCCCGCTTCAATCCCGATGGTTTCTTCTATGCCTACGTGGCCCGTCTCGACGCCATG CCTGTCTGCCTGCTGCTGCTTGGCACCGACCCTGAGGCCTTCCATGACATGGCCACCTGC CGGCGCCTGGTTGAAGATGGCATGCACTCCCTTGGGGCCATGCGTGCCCTCCGGGAGGCT GCCAGCTTCTCCGATGCCCCATCAGCCAATGCCTCTGCCTACAGTGTGCAGGCTGTGGGG GCACCTGGCCTCCGGCACTTCCTCTATAAGCCGCTGGACATCCCCGACCATCACCGCCAG CTGCCCCAGTTTACCAGTCCTGAGCTAGAAGCCCCGTACAGCAGAGAGGAAGAGCGCCAG CGCCTGTCGGACCTGTACCACCGCCTGCACGCCCGCCTCCATAACACCTCCCGGCCTCTG CGCCTCATTTACCACGTGGCAGAGAAGGAGACGCTGCTGGCCTGGGTGACCTCCAAATTT GAGTTGTATACCTGCCTCAGCCCCCTGGTGACCAAGGCGGGTGCCATCCTCGTAGTGACC AAACTCCTGCGTTGGGTGAAGAAAGAGGAGGATCGGCTCTTCATTCGTTACCCACCCAAG TACTCGACACCCCCAGCAGCCCCAGCTGCCTCTACAGACCAAGCTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 240-399, + strand, RNAz p=0.963637 | |
| 662-768, + strand, RNAz p=0.959862 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 240-399, + strand, RNAz p=0.963637 | |
| 662-768, + strand, RNAz p=0.959862 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-437, gnl|bosTau2|chr18 (5000785-5000349) | |
| 1-437, gnl|Hg17|chr16 (75786116-75786552) | |
| 1-437, gnl|Mm7|chr8 (112237938-112238374) | |
| 585-768, gnl|bosTau2|chr18 (4997221-4997038) | |
| 585-768, gnl|canFam2|chr5 (76983209-76982991) | |
| 585-768, gnl|danRer3|chr19 (66715179-66715349) | |
| 585-768, gnl|dasNov1|scaffold_54093 (1411-1206) | |
| 585-768, gnl|echTel1|scaffold_307347 (641-427) | |
| 585-768, gnl|fr1|chrUn (178194577-178194765) | |
| 585-768, gnl|galGal2|chr12 (2267053-2266877) | |
| 585-768, gnl|hg17|chr16 (75789450-75789662) | |
| 585-768, gnl|Hg17|chr16 (75789505-75789679) | |
| 585-768, gnl|loxAfr1|scaffold_115832 (894-1106) | |
| 585-768, gnl|mm7|chr8 (112240900-112241106) | |
| 585-768, gnl|Mm7|chr8 (112240949-112241123) | |
| 585-768, gnl|monDom2|scaffold_134 (470911-470712) | |
| 585-768, gnl|oryCun1|scaffold_178420 (32807-33017) | |
| 585-768, gnl|panTro1|chr18_random (39534726-39534938) | |
| 585-768, gnl|rheMac2|chr20 (75356684-75356896) | |
| 585-768, gnl|rn3|chr19 (43641399-43641607) | |
| 585-768, gnl|tetNig1|chr11 (4375743-4375553) | |
| 585-768, gnl|xenTro1|scaffold_1935 (39398-39217) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-437, gnl|bosTau2|chr18 (5000785-5000349) | |
| 1-437, gnl|Hg17|chr16 (75786116-75786552) | |
| 1-437, gnl|Mm7|chr8 (112237938-112238374) | |
| 585-768, gnl|bosTau2|chr18 (4997221-4997038) | |
| 585-768, gnl|canFam2|chr5 (76983209-76982991) | |
| 585-768, gnl|danRer3|chr19 (66715179-66715349) | |
| 585-768, gnl|dasNov1|scaffold_54093 (1411-1206) | |
| 585-768, gnl|echTel1|scaffold_307347 (641-427) | |
| 585-768, gnl|fr1|chrUn (178194577-178194765) | |
| 585-768, gnl|galGal2|chr12 (2267053-2266877) | |
| 585-768, gnl|hg17|chr16 (75789450-75789662) | |
| 585-768, gnl|Hg17|chr16 (75789505-75789679) | |
| 585-768, gnl|loxAfr1|scaffold_115832 (894-1106) | |
| 585-768, gnl|mm7|chr8 (112240900-112241106) | |
| 585-768, gnl|Mm7|chr8 (112240949-112241123) | |
| 585-768, gnl|monDom2|scaffold_134 (470911-470712) | |
| 585-768, gnl|oryCun1|scaffold_178420 (32807-33017) | |
| 585-768, gnl|panTro1|chr18_random (39534726-39534938) | |
| 585-768, gnl|rheMac2|chr20 (75356684-75356896) | |
| 585-768, gnl|rn3|chr19 (43641399-43641607) | |
| 585-768, gnl|tetNig1|chr11 (4375743-4375553) | |
| 585-768, gnl|xenTro1|scaffold_1935 (39398-39217) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |