Ss1.1-Pig1-37F19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGCCTGAGAAGCTGCCATGCGGCCCCGGCGCCTCCTCCCTCCTCTCTGGGGCCTGCA GCCCCCCGACACACTGCTGCTCCCACTGAAGCCAGAGGCCGTACACAACCTGGACTGCGG TGGACGCCTTCAGCCCCTGCCCCCTCCCGCAGCCTCCCCAGAGGCTGTTTCAACAGAGAA GAGAAATGGCAAAGGGGCAGCTGGCCGGAGAGGTTAGACTGAGAGTGCAAATGGTGTGCG GGCACCCTTCCGCCTTCCCCCTCCACGTCTTGATTTGCTCTGAACAGGCATTTTATAGTG GCCCTCCATACATCAGTCATGAAATGGGCATTTAATCTGTGACATGGTCAAGTCACCTTC TCCTCTCCATGGGGCAGATGCAGAGGCCACAGCCCCACCTGGGATGCCCTGGAGGCTTGT GTTGGCCTGAGGTTGGCACTTTGAGCCCAGGGAGTCCCAGAGACATGTTCCACAAAACTG TCAAGAATGGTCCCATTTCCTTGGTTCTGTTTCTTTTTTCTTTTTTTTTTCTTTTTGGCA GAGATAATCGAATTTTTAAAAGTTGTTTTTAAATGACAATAAAACAAGCCAGAATCTCTT TTCGTGCCGGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGCCTGAGAAGCTGCCATGCGGCCCCGGCGCCTCCTCCCTCCTCTCTGGGGCCTGCA GCCCCCCGACACACTGCTGCTCCCACTGAAGCCAGAGGCCGTACACAACCTGGACTGCGG TGGACGCCTTCAGCCCCTGCCCCCTCCCGCAGCCTCCCCAGAGGCTGTTTCAACAGAGAA GAGAAATGGCAAAGGGGCAGCTGGCCGGAGAGGTTAGACTGAGAGTGCAAATGGTGTGCG GGCACCCTTCCGCCTTCCCCCTCCACGTCTTGATTTGCTCTGAACAGGCATTTTATAGTG GCCCTCCATACATCAGTCATGAAATGGGCATTTAATCTGTGACATGGTCAAGTCACCTTC TCCTCTCCATGGGGCAGATGCAGAGGCCACAGCCCCACCTGGGATGCCCTGGAGGCTTGT GTTGGCCTGAGGTTGGCACTTTGAGCCCAGGGAGTCCCAGAGACATGTTCCACAAAACTG TCAAGAATGGTCCCATTTCCTTGGTTCTGTTTCTTTTTTCTTTTTTTTTTCTTTTTGGCA GAGATAATCGAATTTTTAAAAGTTGTTTTTAAATGACAATAAAACAAGCCAGAATCTCTT TTCGTGCCGGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 383-489, + strand, RNAz p=0.922935 | |
| 397-496, - strand, RNAz p=0.616111 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 383-489, + strand, RNAz p=0.922935 | |
| 397-496, - strand, RNAz p=0.616111 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 399-472, + strand, RNAmicro p=0.976468 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK055174, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 8-381, gnl|bosTau2|chr3 (7991622-7991996) | |
| 8-381, gnl|canFam2|chr7 (46301311-46301040) | |
| 8-381, gnl|echTel1|scaffold_297408 (3225-3487) | |
| 8-381, gnl|hg17|chr1 (150558972-150559303) | |
| 8-381, gnl|Hg17|chr1 (150558975-150559370) | |
| 8-381, gnl|mm7|chr3 (90522740-90522442) | |
| 8-381, gnl|Mm7|chr3 (90522694-90522371) | |
| 8-381, gnl|monDom2|scaffold_59 (4301262-4300851) | |
| 8-381, gnl|oryCun1|scaffold_191558 (7395-7224) | |
| 8-381, gnl|panTro1|chr1 (132538913-132539244) | |
| 8-381, gnl|rheMac2|chr1 (132286559-132286888) | |
| 8-381, gnl|rn3|chr2 (182600909-182600597) | |
| 383-611, gnl|bosTau2|chr3 (7992026-7992258) | |
| 383-611, gnl|canFam2|chr7 (46301021-46300888) | |
| 383-611, gnl|hg17|chr1 (150559327-150559554) | |
| 383-611, gnl|Hg17|chr1 (150559400-150559640) | |
| 383-611, gnl|loxAfr1|scaffold_2219 (106876-107059) | |
| 383-611, gnl|mm7|chr3 (90522408-90522196) | |
| 383-611, gnl|Mm7|chr3 (90522335-90522119) | |
| 383-611, gnl|monDom2|scaffold_59 (4300830-4300582) | |
| 383-611, gnl|oryCun1|scaffold_191558 (7201-6992) | |
| 383-611, gnl|panTro1|chr1 (132539268-132539494) | |
| 383-611, gnl|rheMac2|chr1 (132286913-132287141) | |
| 383-611, gnl|rn3|chr2 (182600563-182600352) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-381, gnl|bosTau2|chr3 (7991622-7991996) | |
| 8-381, gnl|canFam2|chr7 (46301311-46301040) | |
| 8-381, gnl|echTel1|scaffold_297408 (3225-3487) | |
| 8-381, gnl|hg17|chr1 (150558972-150559303) | |
| 8-381, gnl|Hg17|chr1 (150558975-150559370) | |
| 8-381, gnl|mm7|chr3 (90522740-90522442) | |
| 8-381, gnl|Mm7|chr3 (90522694-90522371) | |
| 8-381, gnl|monDom2|scaffold_59 (4301262-4300851) | |
| 8-381, gnl|oryCun1|scaffold_191558 (7395-7224) | |
| 8-381, gnl|panTro1|chr1 (132538913-132539244) | |
| 8-381, gnl|rheMac2|chr1 (132286559-132286888) | |
| 8-381, gnl|rn3|chr2 (182600909-182600597) | |
| 383-611, gnl|bosTau2|chr3 (7992026-7992258) | |
| 383-611, gnl|canFam2|chr7 (46301021-46300888) | |
| 383-611, gnl|hg17|chr1 (150559327-150559554) | |
| 383-611, gnl|Hg17|chr1 (150559400-150559640) | |
| 383-611, gnl|loxAfr1|scaffold_2219 (106876-107059) | |
| 383-611, gnl|mm7|chr3 (90522408-90522196) | |
| 383-611, gnl|Mm7|chr3 (90522335-90522119) | |
| 383-611, gnl|monDom2|scaffold_59 (4300830-4300582) | |
| 383-611, gnl|oryCun1|scaffold_191558 (7201-6992) | |
| 383-611, gnl|panTro1|chr1 (132539268-132539494) | |
| 383-611, gnl|rheMac2|chr1 (132286913-132287141) | |
| 383-611, gnl|rn3|chr2 (182600563-182600352) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| ese (0.126502) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| ese (0.126502) | |
| med (0.116252) | |
| nbm (0.0993246) |